Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.4e-214 748.0 370 100.0
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 6.7e-154 547.7 371 72.8
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-152 543.5 371 71.7
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.4e-151 539.3 371 71.2
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 9.0e-151 537.3 371 71.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.0e-150 536.2 371 70.6
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 6.0e-147 524.6 371 70.1
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.9e-147 524.2 368 70.7
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.9e-147 524.2 368 70.7
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.3e-146 523.5 374 69.8
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 6.7e-146 521.2 371 70.6
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 5.7e-145 518.1 371 70.1
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 8.2e-144 514.2 371 69.0
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 6.9e-143 511.1 373 69.2
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 9.0e-143 510.8 373 68.4
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.6e-142 509.2 376 69.1
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.3e-141 506.9 370 69.2
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 3.8e-141 505.4 371 68.5
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 6.5e-141 504.6 371 69.5
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.9e-140 503.1 371 68.5
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.5e-140 502.7 373 68.1
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.5e-140 502.7 372 68.0
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.5e-140 501.5 373 68.1
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 2.1e-139 499.6 371 68.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.1e-139 499.6 371 68.2
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 2.7e-139 499.2 371 68.5
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 4.6e-139 498.4 371 67.7
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.1e-137 493.8 371 66.3
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.7e-137 491.5 374 66.6
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 7.4e-137 491.1 371 64.4
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.7e-136 488.8 378 66.9
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.8e-135 486.5 371 66.6
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 4.1e-135 485.3 371 64.4
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 6.9e-135 484.6 371 66.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.5e-134 483.4 369 66.9
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 5.9e-134 481.5 371 66.0
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.8e-133 478.8 371 65.8
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 5.0e-133 478.4 371 65.2
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.6e-131 473.4 371 63.9
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.6e-131 473.4 371 63.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.6e-131 472.2 371 65.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.3e-130 469.5 379 63.3
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 2.3e-130 469.5 371 65.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.1e-129 467.2 330 69.7
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.5e-129 466.8 374 62.8
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 7.4e-129 464.5 373 61.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 2.2e-128 463.0 371 62.3
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 8.2e-128 461.1 371 62.5
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.4e-127 460.3 372 62.9
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.4e-127 460.3 354 66.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 5.0e-125 451.8 371 64.2
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 2.5e-124 449.5 364 63.5
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.2e-124 449.1 374 63.1
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.6e-123 445.7 353 65.2
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 1.0e-122 444.1 377 61.3
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 6.7e-122 441.4 370 60.5
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 8.8e-122 441.0 372 62.1
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.1e-121 440.7 380 61.1
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-121 440.7 371 58.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 3.3e-121 439.1 305 70.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 5.7e-121 438.3 372 58.6
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 7.4e-121 438.0 330 67.6
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 9.7e-121 437.6 371 60.9
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.3e-120 437.2 415 55.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.2e-120 436.4 373 57.9
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.2e-120 436.4 371 59.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.8e-120 436.0 381 60.6
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.8e-120 436.0 341 63.6
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 4.8e-120 435.3 379 61.5
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 8.2e-120 434.5 376 61.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 8.2e-120 434.5 348 64.9
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 8.2e-120 434.5 371 57.7
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 9.1e-119 431.0 382 60.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.0e-118 429.9 375 60.5
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 2.6e-118 429.5 382 60.2
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.5e-118 428.7 382 60.2
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 7.7e-118 427.9 382 60.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.0e-117 427.6 360 58.6
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.9e-117 426.0 376 59.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.9e-117 426.0 378 59.8
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 5.0e-117 425.2 379 59.4
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.1e-116 424.1 391 59.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.9e-116 423.3 404 56.7
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.5e-116 422.9 386 58.8
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.5e-116 421.8 387 58.1
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 7.2e-116 421.4 370 58.1
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 7.2e-116 421.4 356 61.0
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.2e-115 420.6 376 59.8
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.2e-115 420.6 385 59.0
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 6.1e-115 418.3 349 59.3
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 3.0e-114 416.0 378 57.7
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 8.8e-114 414.5 381 59.3
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.1e-113 414.1 378 57.4
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.3e-113 412.5 373 57.4
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 5.7e-113 411.8 348 60.9
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.2e-112 409.8 335 63.0
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.8e-111 406.8 374 57.2
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.0e-110 403.3 371 57.1
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.7e-109 400.2 325 63.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.9e-108 396.7 362 58.8
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.6e-107 393.7 325 61.2
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.0e-106 389.4 333 60.4
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.6e-105 386.3 373 54.4
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 9.8e-105 384.4 371 51.5
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 6.3e-104 381.7 373 52.0
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 8.3e-104 381.3 355 56.6
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 2.4e-103 379.8 371 50.9
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 9.1e-103 377.9 371 56.3
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.7e-102 376.3 371 55.3
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.7e-101 373.6 356 55.3
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.7e-101 373.6 305 61.0
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.9e-101 372.9 376 53.5
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.2e-99 367.5 352 56.0
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.0e-98 364.4 394 52.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.7e-96 357.1 380 50.3
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.2e-96 356.7 374 49.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.2e-96 356.7 324 56.2
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.8e-95 353.6 398 49.0
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 6.8e-90 335.1 349 51.0
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 3.5e-86 322.8 385 48.6
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-85 321.2 373 48.0
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.3e-80 304.3 217 68.2
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.9e-80 303.1 297 57.2
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 4.1e-79 299.3 404 41.8
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 5.0e-77 292.4 342 46.5
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.1e-76 291.2 303 53.5
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.4e-74 284.3 481 39.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.5e-73 280.8 242 59.1
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 4.4e-73 279.3 274 56.2
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.9e-71 273.9 260 56.9
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.7e-70 270.0 288 53.1
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 4.6e-70 269.2 387 41.9
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.2e-67 261.2 388 37.9
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.7e-61 240.7 219 57.5
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.1e-59 233.8 241 52.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.4e-58 230.3 256 51.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.1e-58 229.9 210 54.3
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.2e-57 228.0 261 46.7
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 8.7e-53 211.8 337 38.6
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.1e-51 205.3 209 54.5
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.9e-49 198.4 115 81.7
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.9e-48 196.8 153 65.4
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 6.0e-46 189.1 390 31.3
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.0e-42 176.4 137 63.5
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 9.0e-26 122.1 434 23.5
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 7.6e-25 119.0 73 75.3
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 4.2e-23 113.2 201 31.8
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.5e-23 112.8 147 47.6
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.9e-15 87.8 73 61.6
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.5e-15 86.3 120 43.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.5e-12 77.4 42 88.1
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.7e-11 74.7 75 52.0
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.1e-10 72.0 86 45.3
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.5e-09 68.2 50 64.0
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 2.5e-07 60.8 39 79.5


User provided reference genes

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