Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 2.6e-132 475.3 226 100.0
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 2.6e-116 422.2 226 85.0
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.3e-115 419.9 224 84.8
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 1.7e-115 419.5 225 82.7
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 2.8e-115 418.7 226 83.2
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 7.0e-114 414.1 226 84.5
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 2.7e-113 412.1 226 82.7
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 7.8e-113 410.6 224 82.1
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 1.3e-112 409.8 226 81.4
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 5.0e-112 407.9 225 84.0
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 5.0e-112 407.9 224 83.0
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 6.6e-112 407.5 226 82.7
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 1.1e-111 406.8 238 78.2
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 1.5e-111 406.4 226 79.6
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 1.9e-111 406.0 226 80.5
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 4.3e-111 404.8 226 81.9
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 7.3e-111 404.1 224 83.5
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 1.2e-110 403.3 224 79.9
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 1.6e-110 402.9 224 83.0
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 4.7e-110 401.4 226 81.9
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 1.8e-109 399.4 275 69.5
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 3.1e-109 398.7 226 79.6
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 4.0e-109 398.3 226 78.3
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.2e-108 396.7 235 77.0
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 3.4e-108 395.2 226 80.5
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 2.9e-107 392.1 226 78.3
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 3.7e-107 391.7 228 79.4
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 4.9e-107 391.3 226 79.6
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 4.9e-107 391.3 226 77.9
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 6.4e-107 391.0 226 77.9
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 8.3e-107 390.6 225 78.7
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 8.3e-107 390.6 229 76.9
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 1.9e-106 389.4 226 77.0
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 1.9e-106 389.4 226 78.3
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 2.4e-106 389.0 228 78.5
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 4.1e-106 388.3 227 76.7
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 5.4e-106 387.9 227 76.7
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 7.0e-106 387.5 226 77.4
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 1.6e-105 386.3 226 77.0
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 2.7e-105 385.6 225 76.9
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 1.3e-104 383.3 227 76.7
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 1.3e-104 383.3 251 71.3
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 3.9e-104 381.7 228 74.6
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 5.0e-104 381.3 223 78.5
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 6.6e-104 380.9 225 75.6
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 3.3e-103 378.6 224 78.1
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 7.3e-103 377.5 224 77.2
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 7.3e-103 377.5 227 74.9
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 1.2e-102 376.7 225 76.0
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 1.6e-102 376.3 225 75.6
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 2.1e-102 375.9 226 73.9
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 3.6e-102 375.2 229 75.1
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 4.7e-102 374.8 225 76.0
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 4.7e-102 374.8 225 76.4
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 8.1e-102 374.0 227 74.0
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.1e-101 373.6 227 74.4
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 1.1e-101 373.6 227 74.0
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 1.4e-101 373.2 227 74.4
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 4.0e-101 371.7 225 74.7
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 5.2e-101 371.3 239 71.1
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 8.9e-101 370.5 224 72.8
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 1.5e-100 369.8 224 72.8
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 2.6e-100 369.0 230 73.0
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 5.8e-100 367.9 225 72.4
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 1.7e-99 366.3 226 72.1
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 3.7e-99 365.2 242 69.4
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 4.9e-99 364.8 209 76.1
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 6.4e-99 364.4 225 72.4
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 6.4e-99 364.4 226 73.5
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 8.3e-99 364.0 225 73.3
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 8.3e-99 364.0 225 73.3
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 1.1e-98 363.6 232 72.4
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 1.1e-98 363.6 216 75.5
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 1.4e-98 363.2 226 73.9
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 2.4e-98 362.5 228 72.8
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 4.1e-98 361.7 231 72.3
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 5.4e-98 361.3 225 74.2
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 5.4e-98 361.3 228 71.5
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 7.1e-98 360.9 209 77.0
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 9.2e-98 360.5 229 74.2
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 1.6e-97 359.8 232 72.4
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 1.6e-97 359.8 232 72.4
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 2.1e-97 359.4 226 72.6
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 2.3e-96 355.9 229 70.7
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 3.9e-96 355.1 210 74.3
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 6.6e-96 354.4 229 70.3
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 4.3e-95 351.7 226 71.7
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 6.2e-94 347.8 226 70.4
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 4.0e-93 345.1 208 73.1
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 2.7e-89 332.4 224 66.5
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 1.5e-79 300.1 231 63.2
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 7.3e-79 297.7 262 56.9
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 2.8e-78 295.8 215 66.5
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 2.8e-78 295.8 163 80.4
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 7.1e-74 281.2 157 81.5
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 4.6e-73 278.5 164 77.4
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 3.9e-72 275.4 242 58.7
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 1.9e-71 273.1 231 60.2
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 1.6e-70 270.0 246 54.5
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 3.1e-69 265.8 165 72.7
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 1.2e-68 263.8 166 73.5
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 3.4e-68 262.3 269 52.4
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 3.4e-68 262.3 226 58.8
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 2.2e-67 259.6 226 59.7
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 5.5e-66 255.0 155 74.8
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 1.2e-65 253.8 285 50.5
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 1.2e-65 253.8 285 50.5
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 2.1e-62 243.0 139 74.8
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 6.2e-62 241.5 226 56.2
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 1.5e-60 236.9 222 48.6
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 7.1e-58 228.0 221 45.2
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 1.8e-56 223.4 219 46.1
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 5.1e-56 221.9 136 72.1
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 2.5e-55 219.5 140 68.6
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.4e-53 213.8 226 50.9
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 3.2e-50 202.6 122 70.5
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 4.3e-47 192.2 147 61.9
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 5.1e-40 168.7 94 77.7
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 2.2e-38 163.3 194 43.8
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 3.7e-38 162.5 198 37.9
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.3e-27 127.5 98 65.3
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 3.2e-26 122.9 271 29.9
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 4.2e-26 122.5 167 43.1
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 5.2e-24 115.5 70 72.9
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 9.7e-23 111.3 70 71.4
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 3.5e-20 102.8 55 80.0
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 1.0e-16 91.3 195 27.2
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.6e-12 77.4 37 89.2
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 8.8e-08 61.6 163 27.6
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 8.8e-08 61.6 177 24.9
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 8.8e-08 61.6 152 27.0
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.2e-07 61.2 165 23.6
Cre05.g244800 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 1.5e-07 60.8 181 24.3
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 5.7e-07 58.9 178 22.5
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 7.5e-07 58.5 152 24.3
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 9.8e-07 58.2 163 26.4
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 9.8e-07 58.2 181 23.8
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 1.3e-06 57.8 163 23.9
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.3e-06 57.8 161 23.6
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 1.7e-06 57.4 164 25.0
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 2.2e-06 57.0 164 25.0
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 3.7e-06 56.2 190 24.2
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 4.9e-06 55.8 152 26.3
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 4.9e-06 55.8 180 23.9
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 6.3e-06 55.5 187 25.1
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 6.3e-06 55.5 190 22.6
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 6.3e-06 55.5 160 23.1
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 8.3e-06 55.1 164 24.4
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 8.3e-06 55.1 152 23.0
PSO210G5690 Papaver somniferum HOM05D005310 ORTHO05D006920 8.3e-06 55.1 189 24.9
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 8.3e-06 55.1 157 22.9
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 8.3e-06 55.1 190 22.6


User provided reference genes

Program Settings