Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 4.9e-146 521.2 269 100.0
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 9.0e-92 340.9 292 63.7
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 4.9e-90 335.1 292 63.0
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 1.4e-89 333.6 293 62.5
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 3.2e-89 332.4 292 62.0
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 9.3e-89 330.9 290 60.0
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 4.6e-88 328.6 292 60.6
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 4.6e-88 328.6 292 62.3
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.3e-87 327.0 293 61.4
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 6.7e-87 324.7 294 58.2
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 1.1e-86 323.9 292 61.0
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 1.9e-86 323.2 303 60.4
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 1.5e-83 313.5 295 57.3
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.3e-82 310.5 292 58.9
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 1.4e-81 307.0 289 59.2
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 1.4e-81 307.0 292 60.6
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 1.9e-81 306.6 288 58.3
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 1.9e-81 306.6 288 59.0
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 7.1e-81 304.7 277 59.9
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 7.1e-81 304.7 292 57.5
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 1.2e-80 303.9 288 58.7
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 2.7e-80 302.8 288 58.3
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 3.5e-80 302.4 288 58.3
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 4.6e-80 302.0 288 58.3
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.3e-79 300.4 257 62.3
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.8e-79 300.1 291 57.7
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 1.8e-79 300.1 293 57.0
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.3e-79 299.7 277 59.2
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 2.3e-79 299.7 288 59.7
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 6.7e-79 298.1 301 57.5
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.3e-78 295.8 297 55.9
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 4.3e-78 295.4 296 56.4
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 5.7e-78 295.0 293 55.6
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 1.3e-77 293.9 284 59.2
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 2.1e-77 293.1 298 56.7
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 2.1e-77 293.1 291 56.4
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 3.7e-77 292.4 294 57.5
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 8.2e-77 291.2 291 58.4
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 1.1e-76 290.8 259 59.1
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 1.1e-76 290.8 291 57.0
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 1.4e-76 290.4 292 55.8
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 5.3e-76 288.5 298 55.7
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 6.9e-76 288.1 304 55.3
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 1.2e-75 287.3 294 55.1
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 2.6e-75 286.2 288 57.3
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 2.6e-75 286.2 261 57.9
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 7.6e-75 284.6 272 58.1
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 2.9e-74 282.7 293 55.3
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 3.8e-74 282.3 303 54.8
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 1.1e-73 280.8 269 58.7
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 2.5e-73 279.6 289 56.4
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 3.2e-73 279.3 298 54.0
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 5.5e-73 278.5 327 48.9
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 2.1e-72 276.6 256 59.4
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.3e-70 269.2 250 60.0
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 3.3e-70 269.2 287 53.7
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.3e-70 269.2 290 50.3
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 9.7e-70 267.7 277 54.5
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.3e-69 267.3 290 50.3
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 4.8e-69 265.4 290 50.0
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 4.8e-69 265.4 290 50.0
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 4.8e-69 265.4 290 50.0
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 1.8e-68 263.5 266 55.3
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 2.4e-68 263.1 299 51.2
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 2.4e-68 263.1 290 50.3
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 6.9e-68 261.5 260 55.8
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 6.5e-66 255.0 250 57.2
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 6.5e-66 255.0 289 51.9
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 8.5e-66 254.6 249 55.4
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 4.2e-65 252.3 257 53.3
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 1.2e-64 250.8 291 46.7
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.2e-64 250.8 227 56.4
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.2e-64 250.8 288 50.3
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 1.6e-64 250.4 274 54.7
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 2.1e-64 250.0 273 51.6
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 3.6e-64 249.2 239 57.7
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.1e-64 248.4 255 51.8
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.4e-63 247.3 269 52.8
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 6.7e-63 245.0 268 48.1
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 1.8e-60 236.9 265 51.7
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.5e-59 233.8 311 45.3
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 4.5e-59 232.3 282 45.7
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 2.7e-56 223.0 188 62.2
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 1.8e-55 220.3 255 50.6
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.3e-55 219.9 232 53.9
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 4.4e-54 215.7 245 51.0
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 9.7e-54 214.5 221 55.7
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 1.3e-53 214.2 225 53.8
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.7e-53 213.8 245 48.2
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 2.8e-53 213.0 186 58.6
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 3.7e-53 212.6 293 46.4
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 3.7e-53 212.6 292 44.9
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 2.4e-52 209.9 271 46.9
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 5.3e-52 208.8 273 46.2
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.0e-51 206.8 292 43.8
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 3.5e-51 206.1 252 47.6
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 3.5e-51 206.1 236 48.7
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 3.5e-51 206.1 239 50.2
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 4.5e-51 205.7 249 46.2
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 1.3e-50 204.1 222 50.0
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 1.3e-50 204.1 241 48.1
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.7e-50 203.8 241 47.3
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 3.8e-50 202.6 217 51.6
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 3.8e-50 202.6 241 47.7
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 6.5e-50 201.8 233 47.6
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 6.5e-50 201.8 227 49.8
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 1.5e-49 200.7 225 49.8
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 3.2e-49 199.5 218 49.1
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 5.5e-49 198.7 234 48.7
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 9.4e-49 198.0 281 44.1
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.6e-48 197.2 223 48.4
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.1e-48 196.8 225 50.2
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.1e-48 196.8 237 46.4
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 2.1e-48 196.8 223 51.1
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 2.7e-48 196.4 277 43.3
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.7e-48 195.7 232 46.6
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 6.1e-48 195.3 240 47.1
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 6.1e-48 195.3 279 43.0
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 5.2e-47 192.2 240 45.8
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 5.2e-47 192.2 239 45.6
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 8.8e-47 191.4 234 47.0
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 5.7e-46 188.7 233 45.5
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 5.7e-46 188.7 233 45.1
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 7.5e-46 188.3 216 48.6
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 1.3e-45 187.6 250 44.8
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 1.3e-45 187.6 233 45.1
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 4.5e-43 179.1 260 42.7
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.3e-42 177.6 302 37.7
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 2.2e-42 176.8 270 40.0
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 6.5e-42 175.3 257 42.4
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 7.2e-41 171.8 214 45.8
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 3.6e-40 169.5 196 49.0
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 8.8e-39 164.9 249 43.0
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 8.8e-39 164.9 297 36.4
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 1.2e-38 164.5 226 46.5
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.6e-38 163.3 230 42.6
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 4.4e-38 162.5 266 39.8
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 7.5e-38 161.8 301 37.2
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 2.4e-36 156.8 197 43.1
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 5.9e-35 152.1 117 65.0
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 7.7e-35 151.8 178 51.7
arahy.Tifrunner.gnm1.ann1.NU1P8G Arachis hypogaea HOM05D004023 ORTHO05D004681 1.3e-34 151.0 237 40.5
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 1.3e-34 151.0 247 38.9
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 1.7e-34 150.6 209 43.5
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 9.5e-33 144.8 227 38.8
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 8.0e-32 141.7 238 37.8
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 3.0e-31 139.8 216 36.6
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 1.7e-29 134.0 325 32.3
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 3.5e-27 126.3 138 50.0
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 4.5e-27 125.9 198 39.9
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 6.6e-26 122.1 136 47.8
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 1.1e-25 121.3 215 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 1.5e-25 120.9 203 36.9
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-24 117.5 198 38.4
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-24 117.5 198 38.4
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 4.7e-24 115.9 205 39.5
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 1.4e-23 114.4 205 37.6
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 1.2e-22 111.3 185 37.3
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 5.7e-22 109.0 203 37.4
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 4.1e-20 102.8 175 37.7
PSO339G0741 Papaver somniferum HOM05D004023 ORTHO05D004681 2.1e-16 90.5 183 33.9
Oeu013106.1 Olea europaea HOM05D004023 ORTHO05D004681 2.8e-16 90.1 117 41.9
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 1.4e-15 87.8 100 44.0
PSO478G2869 Papaver somniferum HOM05D004023 ORTHO05D004681 4.0e-15 86.3 111 44.1
Lalb_Chr12g0200111 Lupinus albus HOM05D004023 ORTHO05D004681 5.8e-14 82.4 50 82.0
Glyma.08G144367 Glycine max HOM05D004023 ORTHO05D004681 9.8e-14 81.6 99 47.5
Lalb_Chr12g0200121 Lupinus albus HOM05D004023 ORTHO05D004681 1.7e-13 80.9 95 48.4
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 3.5e-11 73.2 235 30.2
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 1.3e-10 71.2 104 41.3
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 1.5e-09 67.8 97 40.2
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 1.1e-07 61.6 97 38.1
VMungo1215G3036 Vigna mungo HOM05D000651 ORTHO05D003435 3.1e-07 60.1 110 37.3
PRCOL_00005269 Prasinoderma coloniale HOM05D005733 ORTHO05D007442 4.0e-07 59.7 105 32.4
PRCOL_00005114 Prasinoderma coloniale HOM05D004023 ORTHO05D004681 8.9e-07 58.5 60 48.3
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.5e-06 57.8 192 28.1
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 2.0e-06 57.4 229 29.3
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 9.9e-06 55.1 209 26.8
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 9.9e-06 55.1 243 25.9
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 9.9e-06 55.1 159 32.7
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 9.9e-06 55.1 98 36.7
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 9.9e-06 55.1 204 27.0
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 9.9e-06 55.1 96 38.5


User provided reference genes

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