Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 2.8e-182 642.1 401 100.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 7.3e-130 468.0 324 72.8
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 7.3e-130 468.0 327 73.1
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 4.7e-129 465.3 325 72.6
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.0e-128 464.2 319 73.0
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.4e-128 463.8 336 71.1
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 3.1e-128 462.6 325 70.8
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 5.2e-128 461.8 324 70.7
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.8e-128 461.5 325 70.8
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 2.0e-127 459.9 322 73.9
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 2.6e-127 459.5 325 72.3
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 2.6e-127 459.5 325 72.3
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 5.8e-127 458.4 327 73.1
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 9.8e-127 457.6 324 71.6
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.9e-126 456.1 316 72.5
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 2.9e-126 456.1 325 69.5
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 4.9e-126 455.3 321 72.3
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 9.2e-125 451.1 311 73.3
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 9.2e-125 451.1 330 71.5
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 9.2e-125 451.1 321 71.0
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 9.2e-125 451.1 338 71.0
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 5.6e-122 441.8 324 70.4
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 3.6e-121 439.1 324 70.1
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.2e-121 438.3 324 69.4
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 8.1e-121 438.0 324 67.3
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 4.0e-120 435.6 319 70.5
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.2e-118 429.9 330 67.0
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.2e-118 429.9 324 67.9
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.1e-117 427.6 327 68.8
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 3.2e-117 426.0 324 67.3
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 5.4e-117 425.2 345 63.8
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 9.2e-117 424.5 326 66.3
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 9.2e-117 424.5 353 63.2
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.6e-116 423.7 323 68.1
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 2.1e-116 423.3 325 68.6
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 2.7e-116 422.9 325 66.2
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 4.6e-116 422.2 325 65.8
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 6.0e-116 421.8 325 67.7
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 6.0e-116 421.8 343 64.7
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 6.0e-116 421.8 324 65.1
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 7.8e-116 421.4 336 67.9
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 1.0e-115 421.0 320 68.4
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 2.3e-115 419.9 326 66.6
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 2.3e-115 419.9 324 67.9
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 3.0e-115 419.5 329 66.6
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 3.9e-115 419.1 329 66.6
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 5.1e-115 418.7 324 65.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 6.6e-115 418.3 324 67.3
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 8.6e-115 417.9 326 66.0
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 8.6e-115 417.9 326 66.6
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.1e-114 417.5 325 66.8
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.5e-114 417.2 326 65.6
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.9e-114 416.8 324 65.4
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.9e-114 416.8 326 66.0
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 2.5e-114 416.4 326 65.6
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 3.3e-114 416.0 324 66.0
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 3.3e-114 416.0 324 66.0
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 3.3e-114 416.0 324 66.4
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.3e-114 415.6 336 67.0
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 4.3e-114 415.6 324 66.0
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.6e-114 415.2 336 67.0
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 9.5e-114 414.5 324 65.7
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 9.5e-114 414.5 336 67.0
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.2e-113 414.1 324 66.4
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 3.6e-113 412.5 324 64.2
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 3.6e-113 412.5 314 67.5
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 8.1e-113 411.4 326 64.4
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 8.1e-113 411.4 326 64.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.1e-112 411.0 326 64.4
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.1e-112 411.0 326 65.6
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 1.4e-112 410.6 326 64.4
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 1.2e-111 407.5 326 63.8
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 1.2e-111 407.5 326 63.8
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.5e-111 407.1 332 66.3
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.4e-111 406.0 368 60.1
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 5.8e-111 405.2 313 68.1
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.3e-110 404.1 310 68.4
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.3e-110 404.1 310 68.7
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 2.9e-110 402.9 311 66.6
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 2.9e-110 402.9 330 63.9
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 8.4e-110 401.4 323 64.4
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 8.4e-110 401.4 287 71.4
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 3.2e-109 399.4 318 63.5
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 3.2e-109 399.4 287 72.1
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 4.1e-109 399.1 326 64.4
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 7.1e-109 398.3 327 63.6
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 2.7e-108 396.4 332 63.0
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.3e-107 393.3 323 61.9
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 3.9e-107 392.5 324 60.8
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 9.6e-106 387.9 314 62.7
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.2e-105 387.5 329 62.0
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 8.9e-104 381.3 338 60.4
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.2e-103 380.9 302 64.6
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 4.4e-103 379.0 332 60.8
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.3e-102 377.5 364 55.8
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 1.7e-102 377.1 348 57.8
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 1.4e-101 374.0 353 58.4
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 1.9e-101 373.6 307 64.5
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 4.6e-100 369.0 326 59.5
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 1.3e-99 367.5 294 64.3
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 1.5e-98 364.0 338 58.0
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.6e-98 362.1 443 49.9
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 1.2e-95 354.4 325 59.4
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 1.2e-92 344.4 340 57.9
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.0e-91 341.3 308 57.8
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.4e-88 330.9 298 56.7
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 7.6e-87 325.1 329 53.2
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 1.3e-86 324.3 301 55.5
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.9e-86 323.2 305 57.7
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.1e-85 321.2 308 57.8
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 4.2e-85 319.3 290 61.0
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.4e-80 304.3 228 69.3
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 3.2e-69 266.5 216 66.7
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 3.2e-69 266.5 225 61.8
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 2.1e-60 237.3 326 42.6
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.8e-59 234.2 331 41.1
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 3.6e-52 209.9 309 43.4
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 7.9e-52 208.8 155 68.4
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-44 184.1 152 63.8
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.8e-43 181.0 380 33.4
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 6.7e-43 179.1 161 59.6
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 7.5e-42 175.6 131 69.5
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.7e-41 174.5 112 79.5
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 2.2e-41 174.1 174 56.9
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.8e-41 172.9 116 72.4
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 9.1e-40 168.7 162 57.4
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 6.5e-38 162.5 258 38.8
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 1.5e-37 161.4 350 32.3
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.2e-31 141.7 210 43.8
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 3.8e-30 136.7 98 71.4
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 3.4e-26 123.6 85 77.6
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 4.9e-25 119.8 168 43.5
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.8e-23 112.5 81 70.4
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-21 108.2 191 39.3
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.5e-21 108.2 135 52.6
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 7.3e-21 105.9 62 83.9
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 6.8e-19 99.4 102 54.9
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 8.9e-19 99.0 135 48.9
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.2e-18 98.6 68 69.1
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.5e-18 98.2 67 77.6
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 4.4e-18 96.7 153 42.5
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 7.5e-18 95.9 333 27.6
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.2e-16 90.5 61 70.5
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-15 87.8 89 60.7
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 2.7e-15 87.4 58 72.4
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 5.0e-14 83.2 58 67.2
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 2.5e-13 80.9 340 27.6
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.6e-12 78.2 55 65.5
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 2.1e-12 77.8 64 64.1
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 6.2e-12 76.3 131 45.0
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 8.9e-11 72.4 97 46.4
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 9.8e-10 68.9 115 33.0
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 9.8e-10 68.9 60 63.3
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 3.9e-06 57.0 33 81.8


User provided reference genes

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