Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 5.1e-236 820.8 462 100.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 4.7e-157 558.5 463 71.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.1e-148 530.8 448 71.9
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 3.4e-147 525.8 463 70.2
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.8e-147 525.0 458 69.0
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 9.8e-147 524.2 461 68.8
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 2.2e-146 523.1 459 68.8
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.7e-146 522.3 461 68.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.4e-145 520.4 457 68.5
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.2e-145 519.2 479 67.0
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 5.4e-145 518.5 461 67.0
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 2.7e-144 516.2 454 68.7
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 2.5e-142 509.6 469 66.5
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.1e-140 504.2 452 68.4
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.3e-138 497.3 451 68.1
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 3.8e-138 495.7 456 66.0
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-137 494.2 451 67.6
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 4.1e-137 492.3 460 65.9
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.1e-137 492.3 452 66.6
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.1e-134 484.2 462 64.7
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.2e-133 480.7 454 64.5
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.6e-133 480.3 443 66.6
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.1e-133 478.0 442 65.8
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.5e-131 473.8 453 64.9
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 2.6e-131 473.0 456 64.3
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.9e-130 469.5 442 64.7
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.1e-129 467.6 459 62.5
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 4.2e-129 465.7 453 63.8
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 9.3e-129 464.5 445 63.8
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.3e-127 459.9 467 63.6
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 3.9e-127 459.1 452 63.7
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 4.3e-126 455.7 452 64.6
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 5.6e-126 455.3 457 62.8
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 1.6e-125 453.8 441 63.9
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.4e-124 450.7 454 63.7
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.8e-124 450.3 463 61.3
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.8e-122 442.6 429 64.1
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.5e-120 436.0 456 61.2
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.3e-119 434.1 459 62.5
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.3e-119 434.1 455 61.5
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.3e-119 433.3 461 60.3
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 5.1e-119 432.2 442 62.4
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.3e-118 429.1 476 57.6
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.6e-118 428.7 445 60.2
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 3.6e-117 426.0 446 61.0
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.8e-116 423.7 336 73.8
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.8e-116 423.7 447 61.3
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 3.1e-116 422.9 444 61.5
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 4.0e-116 422.5 457 58.6
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 6.9e-116 421.8 465 58.7
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 2.6e-115 419.9 447 60.4
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 9.9e-115 417.9 450 59.3
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 9.9e-115 417.9 450 59.6
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.2e-114 416.8 488 55.7
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.1e-113 414.5 442 60.9
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 4.2e-113 412.5 440 60.5
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 4.2e-113 412.5 441 59.6
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 4.2e-113 412.5 440 59.3
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 4.2e-113 412.5 440 59.3
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 7.1e-113 411.8 465 58.5
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 1.2e-112 411.0 442 60.2
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 2.1e-112 410.2 324 73.1
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.5e-112 409.5 463 56.8
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 7.9e-112 408.3 442 59.3
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.0e-111 407.9 653 45.9
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 3.3e-110 402.9 436 60.6
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.3e-109 401.0 440 60.0
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.6e-109 400.6 440 60.7
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.8e-109 399.1 439 59.9
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 5.3e-108 395.6 446 57.8
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 2.6e-107 393.3 450 55.6
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 4.5e-107 392.5 448 57.6
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 1.7e-106 390.6 446 57.6
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 7.1e-105 385.2 447 56.2
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.0e-103 381.3 516 51.4
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 3.9e-103 379.4 444 56.1
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.9e-102 377.1 273 78.0
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.8e-101 373.2 429 56.4
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.7e-101 372.9 369 62.9
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 8.2e-101 371.7 439 57.6
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 1.1e-100 371.3 441 56.0
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 4.5e-99 365.9 440 55.7
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.3e-98 364.4 462 53.0
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.2e-97 359.4 488 51.4
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 3.6e-96 356.3 462 52.2
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 6.1e-96 355.5 515 48.0
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.5e-94 350.9 442 54.8
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 2.5e-94 350.1 443 56.4
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.3e-93 345.5 459 51.4
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.6e-88 330.9 453 51.7
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 6.1e-88 328.9 428 53.3
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 7.4e-86 322.0 436 47.0
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.2e-81 306.6 446 48.4
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.3e-79 300.4 455 47.9
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.1e-78 298.1 452 46.2
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 2.2e-77 293.9 451 47.0
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.2e-77 293.9 255 69.4
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 3.7e-77 293.1 441 45.1
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.0e-75 287.3 444 48.0
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.7e-74 284.3 434 48.8
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.3e-69 268.1 290 58.3
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 3.7e-69 266.5 444 44.6
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.1e-68 263.5 349 51.6
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 3.8e-66 256.5 233 65.7
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 6.5e-66 255.8 310 49.7
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 5.4e-60 236.1 258 53.9
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.1e-56 224.2 295 53.2
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 4.7e-56 223.0 476 42.0
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.0e-50 205.3 326 41.1
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.1e-48 197.6 488 37.9
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.3e-47 194.1 409 37.4
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 3.4e-38 163.7 280 38.6
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 3.6e-32 143.7 166 57.2
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.1e-31 140.6 256 43.0
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.2e-29 134.4 88 86.4
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.1e-25 122.1 372 33.6
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 2.1e-24 117.9 184 47.3
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 2.8e-24 117.5 184 45.7
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 8.9e-23 112.5 90 72.2
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 8.9e-23 112.5 90 72.2
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 9.2e-20 102.4 194 41.8
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.6e-16 91.7 276 30.1
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 2.1e-16 91.3 156 43.6
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 3.6e-16 90.5 87 62.1
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.4e-14 84.0 153 43.1
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.3e-13 82.0 242 31.8
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.9e-13 80.9 138 41.3
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.2e-12 77.4 168 37.5
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.2e-11 75.5 50 76.0
Cfa026984 Carpinus fangiana HOM05D005934 ORTHO05D005165 1.3e-08 65.5 183 29.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 4.0e-07 60.5 119 42.9


User provided reference genes

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