Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 7.9e-56 220.3 120 100.0
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.1e-52 209.9 116 97.4
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.2e-43 179.9 111 84.7
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.6e-43 178.7 111 84.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 4.5e-43 177.9 112 83.0
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 7.7e-43 177.2 111 82.9
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 7.7e-43 177.2 111 82.9
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 7.7e-43 177.2 111 82.9
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.0e-42 176.8 108 86.1
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.2e-42 175.6 111 83.8
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.8e-42 174.9 110 81.8
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 3.8e-42 174.9 111 82.9
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.8e-42 174.9 111 82.9
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.9e-41 172.6 113 78.8
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 2.5e-41 172.2 112 83.0
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 2.5e-41 172.2 112 83.0
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.5e-41 172.2 112 83.0
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.5e-41 172.2 112 83.0
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 2.5e-41 172.2 111 80.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 3.2e-41 171.8 111 80.2
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 4.2e-41 171.4 110 79.1
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.2e-41 171.4 111 81.1
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 7.2e-41 170.6 111 83.8
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 7.2e-41 170.6 113 77.9
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 9.4e-41 170.2 110 80.0
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 9.4e-41 170.2 110 80.9
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.2e-40 169.9 111 80.2
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.6e-40 169.5 113 77.9
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.7e-40 168.7 111 79.3
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 2.7e-40 168.7 112 81.2
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.7e-40 168.7 110 80.0
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 3.6e-40 168.3 111 77.5
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.7e-40 167.9 111 79.3
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 4.7e-40 167.9 112 81.2
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 6.1e-40 167.5 113 77.0
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 6.1e-40 167.5 112 80.4
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 7.9e-40 167.2 111 78.4
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.0e-39 166.8 112 80.4
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.0e-39 166.8 111 76.6
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.0e-39 166.8 111 76.6
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.4e-39 166.4 111 78.4
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.4e-39 166.4 111 78.4
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.8e-39 166.0 108 81.5
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.8e-39 166.0 111 77.5
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.0e-39 165.2 111 81.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.1e-39 164.5 110 77.3
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.1e-39 164.5 110 77.3
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.1e-39 164.5 111 77.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 5.1e-39 164.5 111 76.6
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 6.7e-39 164.1 108 77.8
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 6.7e-39 164.1 108 80.6
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 8.8e-39 163.7 108 77.8
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 8.8e-39 163.7 108 78.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.1e-38 163.3 111 75.7
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.5e-38 162.9 111 76.6
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.5e-38 162.9 110 79.1
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.5e-38 162.9 111 75.7
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.0e-38 162.5 111 78.4
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.0e-38 162.5 111 78.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.0e-38 162.5 110 79.1
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.0e-38 162.5 108 79.6
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.0e-38 162.5 108 79.6
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.0e-38 162.5 112 77.7
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 2.0e-38 162.5 111 75.7
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.6e-38 162.2 110 77.3
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.6e-38 162.2 110 77.3
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.6e-38 162.2 111 76.6
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 3.3e-38 161.8 110 78.2
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.3e-38 161.8 111 75.7
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 4.4e-38 161.4 109 78.0
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 4.4e-38 161.4 110 76.4
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 4.4e-38 161.4 111 75.7
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 4.4e-38 161.4 111 75.7
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 4.4e-38 161.4 111 74.8
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 5.7e-38 161.0 112 76.8
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 9.7e-38 160.2 111 74.8
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 9.7e-38 160.2 110 75.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 9.7e-38 160.2 111 77.5
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.3e-37 159.8 108 75.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.7e-37 159.5 111 72.1
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.7e-37 159.5 111 75.7
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.2e-37 159.1 104 81.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 2.2e-37 159.1 107 80.4
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.8e-37 158.7 108 76.9
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.8e-37 158.7 110 75.5
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.7e-37 158.3 110 76.4
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.7e-37 158.3 110 76.4
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.7e-37 158.3 110 76.4
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 4.8e-37 157.9 111 72.1
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 8.2e-37 157.1 110 75.5
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 8.2e-37 157.1 111 77.5
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.1e-36 156.8 111 71.2
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.4e-36 156.4 111 73.9
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.4e-36 156.4 111 73.0
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-36 156.0 110 75.5
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 1.8e-36 156.0 106 76.4
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.8e-36 156.0 143 65.0
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 9.1e-36 153.7 107 72.9
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.2e-35 153.3 111 75.7
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.5e-35 151.4 111 72.1
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 7.7e-35 150.6 111 70.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.3e-34 149.8 108 74.1
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.2e-34 149.1 108 74.1
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 5.0e-34 147.9 110 71.8
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 5.0e-34 147.9 104 74.0
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 6.5e-34 147.5 105 73.3
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 4.2e-33 144.8 111 68.5
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 7.2e-33 144.1 136 60.3
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 9.4e-33 143.7 142 57.7
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.1e-32 141.0 97 75.3
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-31 139.4 96 76.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.0e-31 138.7 111 66.7
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.1e-30 136.7 113 63.7
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.1e-30 136.7 111 63.1
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 5.7e-30 134.4 84 83.3
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 7.4e-30 134.0 80 86.2
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.7e-29 132.9 78 85.9
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.2e-29 132.5 113 62.8
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 2.8e-29 132.1 80 85.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 8.2e-29 130.6 79 84.8
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 2.4e-28 129.0 77 87.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.7e-26 122.9 91 72.5
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 2.2e-26 122.5 83 77.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 2.2e-26 122.5 83 77.1
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.5e-25 117.9 72 84.7
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 8.0e-24 114.0 77 76.6
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.3e-23 112.5 77 74.0
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 2.0e-22 109.4 65 86.2
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 4.4e-22 108.2 73 75.3
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 5.7e-22 107.8 105 55.2
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.1e-20 103.6 104 56.7
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 3.1e-20 102.1 73 72.6
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 9.1e-20 100.5 69 73.9
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 9.1e-20 100.5 111 50.5
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 5.9e-19 97.8 108 50.9
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 2.2e-18 95.9 111 52.3
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.0e-18 94.7 109 47.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 4.7e-16 88.2 61 72.1
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.0e-16 87.4 57 75.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.0e-15 87.0 57 82.5
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.4e-15 86.7 100 53.0
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.8e-15 84.3 82 54.9
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.2e-14 83.6 105 46.7
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 9.8e-14 80.5 51 84.3
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 3.7e-13 78.6 95 49.5
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 4.8e-13 78.2 104 49.0
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.3e-13 77.8 103 45.6
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.1e-12 75.5 43 88.4
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 9.1e-12 73.9 56 67.9
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.6e-11 73.2 45 82.2
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 2.7e-11 72.4 43 83.7
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 3.5e-11 72.0 97 43.3
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 5.9e-11 71.2 43 83.7
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 5.9e-11 71.2 50 76.0
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 2.3e-10 69.3 95 49.5
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 2.9e-10 68.9 51 70.6
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.8e-10 68.6 98 48.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 6.6e-10 67.8 51 72.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 2.5e-09 65.9 95 48.4
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.5e-09 65.9 65 52.3
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.2e-08 63.5 90 43.3
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.3e-07 59.3 59 49.2


User provided reference genes

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