Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 8.3e-38 160.2 103 100.0
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 3.8e-14 81.6 48 83.3
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 4.6e-12 74.7 43 88.4
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 4.6e-12 74.7 48 77.1
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 4.6e-12 74.7 43 88.4
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 1.7e-11 72.8 44 81.8
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 1.7e-11 72.8 45 80.0
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 2.3e-11 72.4 45 80.0
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 3.0e-11 72.0 45 80.0
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 3.0e-11 72.0 45 80.0
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 3.9e-11 71.6 45 77.8
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 3.9e-11 71.6 43 81.4
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 1.1e-10 70.1 43 79.1
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 1.1e-10 70.1 45 77.8
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.1e-10 70.1 45 77.8
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 1.1e-10 70.1 45 77.8
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.5e-10 69.7 45 75.6
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.5e-10 69.7 45 75.6
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.5e-10 69.7 45 75.6
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 1.5e-10 69.7 45 75.6
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 1.5e-10 69.7 45 75.6
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 1.5e-10 69.7 45 75.6
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 1.9e-10 69.3 48 72.9
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 2.5e-10 68.9 45 80.0
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 3.3e-10 68.6 45 75.6
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 4.3e-10 68.2 45 77.8
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 4.3e-10 68.2 42 78.6
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 5.6e-10 67.8 43 76.7
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 5.6e-10 67.8 43 76.7
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 5.6e-10 67.8 43 76.7
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 7.3e-10 67.4 48 70.8
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 9.6e-10 67.0 45 75.6
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 9.6e-10 67.0 45 73.3
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 1.3e-09 66.6 45 68.9
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 1.6e-09 66.2 44 72.7
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 1.6e-09 66.2 48 68.8
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 1.6e-09 66.2 45 73.3
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 2.1e-09 65.9 46 76.1
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 2.1e-09 65.9 43 72.1
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 2.1e-09 65.9 43 72.1
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 2.8e-09 65.5 47 70.2
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 2.8e-09 65.5 45 73.3
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 4.8e-09 64.7 35 91.4
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 8.1e-09 63.9 45 71.1
Phvul.005G176000 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 8.1e-09 63.9 41 80.5
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 1.8e-08 62.8 45 71.1
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 2.4e-08 62.4 41 73.2
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 5.3e-08 61.2 35 85.7
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 5.3e-08 61.2 42 69.0
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 6.9e-08 60.8 41 70.7
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 6.9e-08 60.8 35 85.7
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 1.5e-07 59.7 43 67.4
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 2.6e-07 58.9 45 66.7
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 3.4e-07 58.5 35 74.3
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 3.4e-07 58.5 44 70.5
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 4.5e-07 58.2 35 77.1
BcaC05g25488 Brassica carinata HOM05D010306 ORTHO05D009265 7.6e-07 57.4 47 63.8
C05p13530 Brassica napus HOM05D010306 ORTHO05D009265 7.6e-07 57.4 47 63.8
BolC5t30090H Brassica oleracea HOM05D010306 ORTHO05D009265 7.6e-07 57.4 47 63.8
Lalb_Chr25g0279481 Lupinus albus HOM05D007863 ORTHO05D009265 1.3e-06 56.6 45 64.4
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 1.3e-06 56.6 35 74.3
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 1.7e-06 56.2 42 61.9
AT1G15385 Arabidopsis thaliana HOM05D010306 ORTHO05D009265 2.2e-06 55.8 45 62.2
BcaB03g14543 Brassica carinata HOM05D010306 ORTHO05D009265 2.2e-06 55.8 48 60.4
BcaC07g41504 Brassica carinata HOM05D010306 ORTHO05D009265 2.2e-06 55.8 48 60.4
A09p61440 Brassica napus HOM05D010306 ORTHO05D009265 2.2e-06 55.8 48 60.4
C08p45000 Brassica napus HOM05D010306 ORTHO05D009265 2.2e-06 55.8 48 60.4
BolC8t52046H Brassica oleracea HOM05D010306 ORTHO05D009265 2.2e-06 55.8 48 60.4
BraA06t24319Z Brassica rapa HOM05D010306 ORTHO05D009265 2.2e-06 55.8 47 61.7
BraA09t41515Z Brassica rapa HOM05D010306 ORTHO05D009265 2.2e-06 55.8 48 60.4
CARHR015920 Cardamine hirsuta HOM05D010306 ORTHO05D009265 2.2e-06 55.8 45 64.4
Thhalv10009244m.g Eutrema salsugineum HOM05D010306 ORTHO05D009265 2.2e-06 55.8 47 61.7
Sp1g13730 Schrenkiella parvula HOM05D010306 ORTHO05D009265 2.2e-06 55.8 47 61.7
Carub.0001s1516 Capsella rubella HOM05D010306 ORTHO05D009265 2.9e-06 55.5 45 62.2
Glyma.07G031800 Glycine max HOM05D007863 ORTHO05D009265 2.9e-06 55.5 43 62.8
AL1G27490 Arabidopsis lyrata HOM05D010306 ORTHO05D009265 3.8e-06 55.1 45 62.2
ATR1156G029 Amborella trichopoda HOM05D007863 ORTHO05D009265 6.4e-06 54.3 35 68.6
Aqoxy7G03727 Aquilegia oxysepala HOM05D007863 ORTHO05D009265 6.4e-06 54.3 36 69.4
A08p31600 Brassica napus HOM05D010306 ORTHO05D009265 8.4e-06 53.9 47 59.6
BraA08t35082Z Brassica rapa HOM05D010306 ORTHO05D009265 8.4e-06 53.9 47 59.6
ClCG09G002780 Citrullus lanatus HOM05D007863 ORTHO05D009265 8.4e-06 53.9 33 75.8
Lalb_Chr04g0262451 Lupinus albus HOM05D007863 ORTHO05D009265 8.4e-06 53.9 43 62.8


User provided reference genes

Program Settings