Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 5.2e-210 734.2 384 100.0
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 2.3e-173 612.5 363 87.3
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.1e-172 610.1 362 87.0
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 4.3e-172 608.2 382 84.0
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.1e-171 605.9 362 87.3
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.8e-170 602.8 382 82.5
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 4.9e-168 594.7 384 81.5
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 4.9e-168 594.7 377 83.6
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 8.4e-168 594.0 362 85.1
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 6.0e-166 587.8 372 82.8
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 6.0e-166 587.8 372 82.8
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 6.0e-166 587.8 382 80.6
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.3e-165 586.6 383 77.8
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.8e-165 586.3 383 80.2
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 2.3e-165 585.9 389 79.4
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.3e-165 585.9 389 79.4
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.3e-165 585.9 364 83.8
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 2.3e-165 585.9 381 81.4
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 8.7e-165 583.9 386 78.2
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 8.7e-165 583.9 356 85.1
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 8.7e-165 583.9 370 79.7
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.1e-164 583.6 384 78.9
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.1e-164 583.6 392 79.6
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 2.5e-164 582.4 371 77.6
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.5e-164 582.4 383 77.5
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.3e-164 581.6 356 84.8
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 4.3e-164 581.6 375 81.9
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.6e-164 581.3 361 83.7
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 7.4e-164 580.9 361 83.7
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 9.6e-164 580.5 360 82.5
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.6e-163 579.7 353 85.3
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 2.8e-163 578.9 387 77.8
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 4.8e-163 578.2 385 78.2
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 6.2e-163 577.8 378 80.2
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 6.2e-163 577.8 365 82.7
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 8.1e-163 577.4 360 82.8
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 1.8e-162 576.2 368 81.8
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 2.4e-162 575.9 383 79.9
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 3.1e-162 575.5 386 77.5
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 9.0e-162 573.9 370 81.9
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.5e-161 573.2 371 81.4
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.0e-161 572.8 354 81.1
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 2.0e-161 572.8 369 81.3
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.0e-161 572.8 356 82.0
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 4.5e-161 571.6 382 77.2
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 7.6e-161 570.9 371 81.4
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 7.6e-161 570.9 356 80.1
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.3e-160 570.1 358 83.0
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 1.7e-160 569.7 369 78.3
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 2.2e-160 569.3 363 82.9
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.2e-160 569.3 387 77.8
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 3.8e-160 568.5 370 81.4
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 3.8e-160 568.5 383 76.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 4.9e-160 568.2 357 78.4
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 6.5e-160 567.8 366 76.2
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.5e-160 567.8 389 77.1
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.1e-159 567.0 354 81.4
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.9e-159 566.2 373 77.5
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.9e-159 566.2 380 78.9
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 1.9e-159 566.2 353 82.7
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 2.5e-159 565.8 358 80.2
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 3.2e-159 565.5 372 78.8
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 4.2e-159 565.1 375 79.2
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 5.5e-159 564.7 380 74.2
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 7.1e-159 564.3 358 79.9
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 9.3e-159 563.9 385 76.6
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.2e-158 563.5 388 77.1
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.2e-158 563.5 388 77.1
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.2e-158 563.5 370 80.0
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 1.6e-158 563.1 378 78.8
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 6.0e-158 561.2 360 78.1
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 7.9e-158 560.8 362 80.1
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.8e-157 559.7 403 75.4
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 6.7e-157 557.8 368 79.6
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.1e-156 557.0 370 78.6
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-156 556.6 379 77.6
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.5e-156 556.6 379 77.6
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.9e-156 556.2 385 72.7
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.5e-156 555.8 366 79.0
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 4.3e-156 555.1 367 77.9
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 7.4e-156 554.3 388 76.3
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.6e-155 553.1 384 72.4
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.1e-155 552.7 372 78.2
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.8e-155 552.4 376 77.9
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 3.7e-155 552.0 388 76.0
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 4.8e-155 551.6 364 76.9
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 4.8e-155 551.6 359 76.9
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 6.3e-155 551.2 388 76.0
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 6.3e-155 551.2 365 75.6
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.1e-154 550.4 383 75.7
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 1.8e-154 549.7 382 73.0
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.4e-154 549.3 382 72.8
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 3.1e-154 548.9 385 71.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 5.3e-154 548.1 384 72.1
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 6.9e-154 547.7 385 76.9
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 9.0e-154 547.4 367 74.9
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.6e-153 545.8 372 75.0
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 7.6e-153 544.3 457 65.4
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 1.0e-152 543.9 363 74.7
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.0e-152 543.9 331 81.0
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.3e-152 543.5 373 76.9
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 2.2e-152 542.7 336 83.0
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.1e-151 540.4 364 75.3
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.4e-151 540.0 386 74.6
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.4e-151 540.0 385 70.6
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.2e-151 537.7 380 72.9
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 2.1e-150 536.2 363 73.8
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 4.6e-150 535.0 365 73.7
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 7.9e-150 534.3 328 79.0
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 8.7e-149 530.8 365 74.8
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 8.7e-149 530.8 355 74.9
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.5e-148 529.3 358 74.6
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 4.3e-148 528.5 385 74.3
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.4e-146 523.5 352 76.7
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.8e-146 523.1 373 72.1
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 5.3e-146 521.5 328 77.7
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 2.6e-145 519.2 368 73.1
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 7.7e-145 517.7 339 76.4
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.0e-144 517.3 364 73.6
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.3e-144 516.9 361 75.3
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 9.4e-143 510.8 365 72.6
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 2.1e-142 509.6 362 70.7
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.9e-142 507.7 383 72.3
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.5e-140 502.7 290 82.8
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.3e-138 495.0 303 85.5
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 4.5e-137 491.9 395 66.8
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 2.9e-136 489.2 376 72.6
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 5.0e-136 488.4 351 76.1
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 3.2e-135 485.7 400 66.5
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 7.9e-134 481.1 289 85.5
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.7e-133 478.0 356 73.0
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 6.7e-133 478.0 382 67.8
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 1.5e-132 476.9 344 71.2
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 2.6e-129 466.1 271 81.9
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 2.9e-128 462.6 314 75.2
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.1e-127 460.7 334 65.9
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 2.8e-123 446.0 354 61.3
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 7.0e-122 441.4 358 61.5
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 9.1e-122 441.0 265 81.9
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.5e-119 433.0 323 63.8
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.2e-118 430.6 320 64.4
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.7e-118 429.5 362 64.4
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.0e-117 427.6 368 61.7
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 6.3e-115 418.3 299 66.6
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 4.5e-113 412.1 422 56.2
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 3.2e-111 406.0 221 88.7
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.6e-110 403.7 330 58.8
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 3.0e-109 399.4 376 62.0
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 5.7e-100 368.6 238 76.5
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 5.8e-92 342.0 340 55.0
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.2e-86 324.3 235 65.5
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.8e-85 320.5 248 71.0
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 6.6e-72 275.4 150 88.0
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 2.8e-62 243.4 384 44.0
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 1.8e-56 224.2 195 59.0
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 2.3e-56 223.8 170 72.9
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 2.0e-44 184.1 172 58.1
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 4.6e-33 146.4 96 75.0
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 9.7e-31 138.7 302 30.5
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 1.7e-27 127.9 101 63.4
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 3.0e-24 117.1 297 29.0
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 2.6e-23 114.0 332 28.6
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 2.2e-22 110.9 65 76.9
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 8.2e-22 109.0 241 35.7
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.5e-18 97.4 90 74.4
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 2.5e-18 97.4 68 70.6
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 2.5e-18 97.4 68 70.6
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 3.2e-18 97.1 89 75.3
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 5.5e-18 96.3 68 70.6
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.8e-16 91.3 74 68.9
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 3.9e-16 90.1 392 24.5
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 3.3e-15 87.0 59 71.2
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.9e-10 71.2 112 35.7
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 9.4e-10 68.9 33 97.0
Cpa.g.c48203 Carica papaya HOM05D003970 ORTHO05D004615 3.0e-08 63.9 71 71.8
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 2.0e-07 61.2 49 63.3
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 3.3e-07 60.5 39 74.4
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 3.3e-07 60.5 39 74.4
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 5.7e-07 59.7 39 71.8


User provided reference genes

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