Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 5.2e-119 431.0 213 100.0
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 2.0e-54 216.5 199 60.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 7.7e-54 214.5 171 64.3
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.7e-53 213.4 193 60.1
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 2.9e-53 212.6 192 57.8
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.1e-52 210.7 187 60.4
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.5e-52 210.3 192 56.8
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 3.2e-52 209.1 196 57.7
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.6e-51 206.8 197 59.4
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 2.1e-51 206.5 194 58.8
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 2.7e-51 206.1 153 64.7
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 8.0e-51 204.5 197 56.9
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 1.0e-50 204.1 193 58.0
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 2.3e-50 203.0 167 64.1
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 2.3e-50 203.0 190 54.7
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 3.0e-50 202.6 191 56.5
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 8.8e-50 201.1 156 62.8
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 8.8e-50 201.1 160 63.1
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.1e-49 200.7 153 63.4
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 3.3e-49 199.1 202 53.5
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 3.3e-49 199.1 172 58.7
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 4.4e-49 198.7 200 56.5
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 5.7e-49 198.4 171 59.6
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.3e-48 197.2 195 55.4
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 2.2e-48 196.4 189 56.1
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 2.8e-48 196.1 169 62.1
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 2.8e-48 196.1 180 57.8
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 8.2e-48 194.5 154 64.9
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.1e-47 194.1 166 62.7
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.4e-47 193.7 150 62.7
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 2.4e-47 193.0 178 57.3
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 2.4e-47 193.0 171 62.0
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 3.1e-47 192.6 197 52.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 5.3e-47 191.8 166 59.6
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 7.0e-47 191.4 178 56.2
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 7.0e-47 191.4 189 55.0
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 9.1e-47 191.0 204 52.9
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 1.6e-46 190.3 194 55.2
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 3.5e-46 189.1 178 55.1
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 4.5e-46 188.7 172 58.7
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 7.7e-46 188.0 156 61.5
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 7.7e-46 188.0 156 61.5
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 7.7e-46 188.0 156 61.5
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 3.8e-45 185.7 117 75.2
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.1e-44 184.1 188 51.6
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 3.2e-44 182.6 156 62.8
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 9.4e-44 181.0 129 69.8
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-43 180.3 150 62.0
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 2.7e-43 179.5 155 60.0
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 1.0e-42 177.6 191 52.4
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 5.2e-42 175.3 163 55.8
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 5.2e-42 175.3 152 57.2
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 6.8e-42 174.9 149 61.1
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 1.2e-41 174.1 185 53.5
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.2e-41 174.1 150 60.0
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 2.0e-41 173.3 156 57.1
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 3.4e-41 172.6 151 58.3
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 4.4e-41 172.2 102 78.4
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 4.4e-41 172.2 176 56.2
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 7.5e-41 171.4 195 51.8
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.3e-40 170.6 154 56.5
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.7e-40 169.1 100 79.0
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 3.7e-40 169.1 166 53.0
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 8.3e-40 167.9 164 54.9
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 1.4e-39 167.2 111 71.2
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 5.4e-39 165.2 196 48.5
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 7.0e-39 164.9 153 56.2
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 2.0e-38 163.3 146 59.6
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 2.7e-38 162.9 140 57.9
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 2.7e-38 162.9 188 48.4
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 3.5e-38 162.5 196 47.4
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 3.5e-38 162.5 196 47.4
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 4.5e-38 162.2 107 69.2
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 5.9e-38 161.8 182 49.5
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 1.0e-37 161.0 164 53.7
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 1.0e-37 161.0 192 47.4
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.3e-37 160.6 194 49.5
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.7e-37 160.2 188 48.9
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.7e-37 160.2 192 50.0
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 2.2e-37 159.8 165 52.7
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 2.9e-37 159.5 191 51.3
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 3.8e-37 159.1 146 56.2
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 5.0e-37 158.7 168 51.2
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 5.0e-37 158.7 102 72.5
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 6.5e-37 158.3 102 70.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 8.5e-37 157.9 165 52.1
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.9e-36 156.8 117 65.8
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 1.9e-36 156.8 119 62.2
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 5.5e-36 155.2 104 71.2
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.7e-35 152.9 118 65.3
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 3.6e-35 152.5 94 73.4
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 3.6e-35 152.5 192 45.8
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 3.6e-35 152.5 117 65.8
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 6.1e-35 151.8 188 47.3
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 6.1e-35 151.8 192 47.9
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 6.1e-35 151.8 83 83.1
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 6.1e-35 151.8 150 52.7
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.0e-34 151.0 127 59.8
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 2.3e-34 149.8 188 46.3
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 4.0e-34 149.1 119 62.2
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 6.8e-34 148.3 100 70.0
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 1.2e-33 147.5 118 63.6
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.2e-33 147.5 99 70.7
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 1.5e-33 147.1 132 57.6
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 2.6e-33 146.4 202 44.1
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 2.2e-32 143.3 105 64.8
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.2e-32 143.3 242 39.7
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.2e-32 143.3 238 39.5
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 4.9e-32 142.1 238 39.5
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.3e-32 141.7 238 39.5
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.2e-31 137.9 99 65.7
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.2e-31 137.9 99 65.7
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 7.7e-30 134.8 77 76.6
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 7.7e-30 134.8 163 45.4
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 7.3e-28 128.3 100 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 1.0e-26 124.4 131 49.6
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 2.0e-25 120.2 125 50.4
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.7e-24 117.1 122 53.3
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.8e-23 113.6 87 59.8
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 2.4e-23 113.2 88 62.5
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.7e-21 107.1 72 63.9
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 3.0e-21 106.3 115 51.3
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.6e-21 105.1 96 55.2
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 3.6e-19 99.4 97 48.5
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 1.4e-18 97.4 87 52.9
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.9e-18 94.7 122 47.5
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 8.9e-18 94.7 119 42.9
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.0e-14 83.6 92 48.9
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.5e-14 82.8 80 55.0
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 5.0e-13 79.0 112 40.2
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 1.9e-12 77.0 76 51.3
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.6e-11 73.9 85 43.5
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 3.6e-11 72.8 174 32.2
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.4e-09 65.9 85 45.9
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.9e-08 63.2 79 36.7
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 2.9e-08 63.2 76 43.4


User provided reference genes

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