Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 2.4e-83 312.4 185 100.0
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.2e-79 300.1 179 99.4
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 6.3e-44 181.4 133 92.5
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.6e-15 87.0 54 81.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 3.4e-13 79.3 54 74.1
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 5.7e-13 78.6 54 74.1
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 5.7e-13 78.6 54 72.2
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 9.8e-13 77.8 42 88.1
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.3e-12 77.4 54 74.1
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.7e-12 77.0 54 70.4
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.2e-12 76.6 42 88.1
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.8e-12 76.3 54 70.4
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 8.3e-12 74.7 54 66.7
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.1e-11 74.3 54 66.7
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.8e-11 73.6 54 68.5
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.8e-11 73.6 54 68.5
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.1e-11 72.8 54 70.4
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 4.1e-11 72.4 51 70.6
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 5.4e-11 72.0 51 70.6
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 7.0e-11 71.6 54 63.0
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 7.0e-11 71.6 54 64.8
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 9.1e-11 71.2 54 66.7
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.1e-11 71.2 54 66.7
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.2e-10 70.9 54 66.7
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.2e-10 70.9 54 66.7
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.2e-10 70.9 48 70.8
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-10 70.9 48 70.8
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.2e-10 70.9 54 66.7
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.2e-10 70.9 54 66.7
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.2e-10 70.9 54 66.7
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.6e-10 70.5 54 64.8
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.6e-10 70.5 54 66.7
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 2.7e-10 69.7 54 63.0
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.7e-10 69.7 70 60.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 2.7e-10 69.7 54 64.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.7e-10 69.7 44 72.7
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.7e-10 69.7 48 72.9
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.7e-10 69.7 54 68.5
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.5e-10 69.3 54 64.8
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 4.5e-10 68.9 54 66.7
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 4.5e-10 68.9 48 72.9
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 4.5e-10 68.9 54 68.5
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 5.9e-10 68.6 54 64.8
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.9e-10 68.6 54 64.8
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.9e-10 68.6 54 64.8
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 5.9e-10 68.6 54 64.8
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 5.9e-10 68.6 54 64.8
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 7.7e-10 68.2 54 64.8
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 7.7e-10 68.2 48 70.8
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 7.7e-10 68.2 54 59.3
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.0e-09 67.8 54 63.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.0e-09 67.8 54 63.0
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.3e-09 67.4 54 64.8
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.3e-09 67.4 42 78.6
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.3e-09 66.6 54 61.1
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 59.3
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 66.7
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 66.7
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 63.0
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 64.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 61.1
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 61.1
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.9e-09 66.2 54 61.1
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 3.8e-09 65.9 42 76.2
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.8e-09 65.9 46 67.4
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 3.8e-09 65.9 42 73.8
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 3.8e-09 65.9 54 59.3
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 3.8e-09 65.9 54 61.1
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 5.0e-09 65.5 71 57.7
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 5.0e-09 65.5 71 57.7
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 5.0e-09 65.5 71 57.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 6.5e-09 65.1 54 63.0
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.5e-09 65.1 54 61.1
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.5e-09 65.1 54 61.1
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.5e-09 65.1 54 63.0
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 8.6e-09 64.7 42 73.8
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 8.6e-09 64.7 51 64.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.1e-08 64.3 51 60.8
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.1e-08 64.3 41 73.2
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.5e-08 63.9 54 57.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.5e-08 63.9 48 64.6
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-08 63.5 54 59.3
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.9e-08 63.5 42 73.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.5e-08 63.2 54 61.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 3.2e-08 62.8 54 59.3
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 3.2e-08 62.8 42 71.4
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 4.2e-08 62.4 71 53.5
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.2e-08 62.4 42 69.0
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 5.5e-08 62.0 71 54.9
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 7.2e-08 61.6 71 53.5
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 7.2e-08 61.6 71 56.3
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 7.2e-08 61.6 71 56.3
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.2e-08 61.6 45 64.4
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 7.2e-08 61.6 48 62.5
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 9.5e-08 61.2 72 55.6
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 9.5e-08 61.2 71 56.3
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 9.5e-08 61.2 54 55.6
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 9.5e-08 61.2 75 52.0
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 9.5e-08 61.2 71 56.3
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 9.5e-08 61.2 61 57.4
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.2e-07 60.8 71 53.5
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.2e-07 60.8 42 71.4
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.2e-07 60.8 71 53.5
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.2e-07 60.8 54 57.4
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.2e-07 60.8 54 59.3
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.6e-07 60.5 44 65.9
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.6e-07 60.5 54 57.4
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.1e-07 60.1 71 54.9
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.8e-07 59.7 50 60.0
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.8e-07 59.7 54 63.0
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 4.7e-07 58.9 75 49.3
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 6.1e-07 58.5 75 49.3
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.0e-06 57.8 44 61.4
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.0e-06 57.8 54 55.6
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.8e-06 57.0 51 58.8
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 2.3e-06 56.6 54 59.3
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 4.0e-06 55.8 75 48.0
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.2e-06 55.5 50 54.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 6.8e-06 55.1 51 56.9


User provided reference genes

Program Settings