Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 1.5e-229 799.3 448 100.0
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 2.2e-74 283.9 464 42.5
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.5e-72 276.6 459 43.1
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 6.5e-71 272.3 465 42.6
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 1.5e-70 271.2 464 41.8
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 9.4e-70 268.5 465 41.5
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.7e-69 266.9 471 42.0
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 6.8e-68 262.3 463 42.1
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 1.9e-62 244.2 465 39.1
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 1.9e-62 244.2 454 40.3
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 4.7e-61 239.6 471 38.9
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.0e-60 236.9 484 38.8
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 5.2e-60 236.1 478 37.2
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 3.4e-59 233.4 448 38.4
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 4.1e-57 226.5 498 37.3
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 5.4e-57 226.1 491 35.4
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 7.0e-57 225.7 451 37.9
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 2.7e-56 223.8 481 34.9
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 2.5e-54 217.2 439 37.8
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 5.6e-54 216.1 488 34.4
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 2.3e-52 210.7 481 34.1
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 1.9e-49 201.1 495 36.4
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 5.4e-49 199.5 450 36.9
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 2.7e-48 197.2 433 35.6
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 6.0e-48 196.1 423 38.3
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 2.8e-45 187.2 426 35.0
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 1.1e-44 185.3 452 34.7
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 3.1e-44 183.7 466 35.0
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.9e-41 174.5 449 37.4
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 5.4e-41 172.9 434 33.6
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 1.6e-40 171.4 460 35.9
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 2.3e-39 167.5 455 35.2
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 3.9e-39 166.8 426 32.4
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 5.1e-39 166.4 429 31.7
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.5e-38 164.9 379 35.6
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.9e-38 164.5 446 32.5
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 3.3e-38 163.7 491 33.4
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 7.3e-38 162.5 463 34.8
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 7.3e-38 162.5 451 34.8
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 1.2e-37 161.8 472 32.2
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.6e-37 161.4 425 31.3
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 2.1e-37 161.0 443 33.9
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.1e-37 161.0 446 32.1
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 2.1e-37 161.0 462 34.2
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 4.7e-37 159.8 444 33.3
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 4.7e-37 159.8 439 31.9
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 1.4e-36 158.3 440 33.9
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 1.4e-36 158.3 466 33.3
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.1e-36 157.1 467 34.5
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 4.0e-36 156.8 456 33.6
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 6.8e-36 156.0 467 34.5
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 8.9e-36 155.6 430 34.9
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 1.5e-35 154.8 460 33.7
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 2.6e-35 154.1 476 31.7
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 2.6e-35 154.1 444 32.9
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 2.6e-35 154.1 444 32.9
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 4.4e-35 153.3 469 32.2
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 1.3e-34 151.8 442 31.4
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 2.2e-34 151.0 478 32.6
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 2.9e-34 150.6 468 29.5
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 6.4e-34 149.4 433 33.0
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.1e-33 148.7 446 31.4
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.4e-33 148.3 495 28.3
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 1.9e-33 147.9 435 32.4
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 1.9e-33 147.9 410 32.9
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 9.2e-33 145.6 449 32.5
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 1.2e-32 145.2 466 32.0
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.2e-32 145.2 488 28.7
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 2.7e-32 144.1 362 35.9
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 2.7e-32 144.1 476 31.5
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 4.6e-32 143.3 432 33.3
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 6.6e-31 139.4 475 31.6
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 8.6e-31 139.0 465 31.6
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.5e-30 138.3 470 31.3
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 1.9e-30 137.9 309 36.2
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 5.6e-30 136.3 454 32.4
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 1.6e-29 134.8 449 30.3
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 2.8e-29 134.0 449 30.5
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 6.2e-29 132.9 465 30.1
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 1.1e-28 132.1 493 28.2
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 3.4e-27 127.1 501 27.9
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 3.4e-27 127.1 399 33.1
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 5.8e-27 126.3 465 31.2
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 5.8e-27 126.3 473 28.5
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 1.3e-26 125.2 457 30.6
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.8e-26 123.6 470 27.7
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 6.4e-26 122.9 422 30.8
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 1.4e-25 121.7 507 28.0
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.4e-25 121.7 504 29.0
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 3.2e-25 120.6 473 27.9
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 4.2e-25 120.2 519 28.1
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 5.4e-25 119.8 490 28.0
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 7.1e-25 119.4 498 27.5
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.1e-24 117.9 324 34.3
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.1e-24 117.9 473 27.7
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 3.5e-24 117.1 419 29.8
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 6.0e-24 116.3 505 25.9
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 6.0e-24 116.3 448 29.5
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 7.8e-24 115.9 508 28.1
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 1.3e-23 115.2 381 33.6
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 2.3e-23 114.4 227 41.0
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 5.1e-23 113.2 470 28.9
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 5.1e-23 113.2 419 29.4
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 6.6e-23 112.8 484 30.2
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 6.6e-23 112.8 490 26.9
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 7.3e-22 109.4 484 29.3
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 1.3e-21 108.6 448 28.8
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 2.8e-21 107.5 492 25.8
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 2.8e-21 107.5 493 27.8
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 8.1e-21 105.9 273 34.8
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 1.4e-20 105.1 460 30.0
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.4e-20 105.1 509 26.3
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 5.3e-20 103.2 486 26.5
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 6.9e-20 102.8 508 26.8
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 9.0e-20 102.4 480 26.9
ClCG05G001920 Citrullus lanatus HOM05D002977 ORTHO05D003225 3.4e-19 100.5 356 30.1
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 3.4e-19 100.5 442 26.7
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 4.4e-19 100.1 480 28.3
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 9.9e-19 99.0 480 26.5
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.3e-18 98.6 503 26.2
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 1.7e-18 98.2 505 23.6
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 3.8e-18 97.1 233 38.2
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 4.9e-18 96.7 464 25.0
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 4.9e-18 96.7 462 27.9
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 6.4e-18 96.3 507 24.9
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 8.4e-18 95.9 452 27.4
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.1e-17 95.5 475 26.9
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.1e-17 95.5 487 24.6
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.4e-17 95.1 507 23.9
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 2.7e-16 90.9 493 23.5
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 3.5e-16 90.5 391 27.1
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 6.0e-16 89.7 519 23.9
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 7.9e-16 89.4 444 27.7
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 1.7e-15 88.2 484 26.7
CsaV3_3G009320 Cucumis sativus L. HOM05D002977 ORTHO05D003225 1.7e-15 88.2 364 27.5
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.7e-15 88.2 496 24.8
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 1.7e-15 88.2 475 27.2
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.3e-15 87.8 451 28.2
Ah.16g108930 Amaranthus hybridus HOM05D002977 ORTHO05D003225 3.9e-15 87.0 445 25.6
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 3.9e-15 87.0 511 24.9
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 5.1e-15 86.7 283 30.4
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 5.1e-15 86.7 476 27.3
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 8.7e-15 85.9 470 24.0
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 8.7e-15 85.9 467 24.4
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 8.7e-15 85.9 441 26.8
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 8.7e-15 85.9 441 26.8
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 1.1e-14 85.5 519 27.0
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.5e-14 85.1 457 24.3
MELO3C006152.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.5e-14 85.1 350 28.6
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.3e-14 84.0 451 27.5
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 5.6e-14 83.2 479 27.8
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 2.1e-13 81.3 497 27.8
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 2.8e-13 80.9 464 24.1
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.8e-13 80.9 344 30.8
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 4.8e-13 80.1 501 26.1
Sed0021237 Sechium edule HOM05D002977 ORTHO05D003225 1.1e-12 79.0 358 31.0
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 1.4e-12 78.6 457 25.6
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 2.4e-12 77.8 476 25.4
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 3.1e-12 77.4 196 32.7
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 5.3e-12 76.6 496 26.6
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 6.9e-12 76.3 272 31.2
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.0e-11 74.7 490 25.9
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.0e-11 74.7 341 27.0
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.0e-11 74.7 204 26.0
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 9.9e-11 72.4 471 28.2
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 1.3e-10 72.0 101 34.7
AUR62033369 Chenopodium quinoa HOM05D049868 ORTHO05D003225 2.2e-10 71.2 357 27.7
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 2.9e-10 70.9 478 23.6
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 4.9e-10 70.1 447 22.6
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 8.4e-10 69.3 429 25.9
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 8.4e-10 69.3 429 25.9
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 1.1e-09 68.9 563 24.7
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 2.4e-09 67.8 459 24.0
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 4.6e-08 63.5 490 24.9
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 1.8e-07 61.6 472 25.0
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 3.0e-07 60.8 456 23.2
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 3.0e-07 60.8 463 25.3
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 3.9e-07 60.5 218 31.7
PSO782G0819 Papaver somniferum HOM05D002977 ORTHO05D003225 5.1e-07 60.1 570 24.7
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 1.5e-06 58.5 471 24.4
AUR62004288 Chenopodium quinoa HOM05D049868 ORTHO05D003225 1.9e-06 58.2 255 28.2
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 4.3e-06 57.0 254 29.1
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 9.6e-06 55.8 483 23.6


User provided reference genes

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