Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.4e-106 389.0 222 100.0
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.7e-59 233.4 224 65.6
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.7e-59 232.3 224 66.5
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 5.0e-56 221.9 224 68.8
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.6e-54 216.9 223 61.0
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 2.8e-54 216.1 227 66.5
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 3.6e-54 215.7 224 66.1
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.9e-51 205.3 223 59.2
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 3.2e-50 202.6 225 59.6
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.1e-50 202.2 225 61.8
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.1e-50 202.2 224 58.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 7.0e-50 201.4 225 56.4
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 4.6e-49 198.7 224 58.5
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.0e-48 197.6 224 57.6
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.0e-48 197.6 226 63.3
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.3e-48 196.4 226 60.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.3e-48 196.4 226 60.2
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.3e-47 192.2 225 58.7
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.7e-46 188.7 224 55.8
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.1e-45 186.0 228 53.9
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-44 184.1 222 57.2
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.7e-43 180.3 224 53.1
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 1.7e-43 180.3 224 56.2
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 4.9e-43 178.7 227 57.3
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 4.1e-42 175.6 248 54.8
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.0e-42 174.9 224 54.5
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.0e-41 173.3 185 67.0
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.5e-41 172.6 223 53.4
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 7.8e-41 171.4 224 54.0
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.3e-40 170.6 224 52.2
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.7e-40 170.2 223 54.7
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.0e-40 169.5 228 58.3
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.9e-40 169.1 223 55.2
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 8.6e-40 167.9 224 51.8
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.5e-39 167.2 226 48.2
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.5e-39 167.2 225 57.3
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.5e-39 166.4 226 54.4
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 5.6e-39 165.2 225 51.1
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 7.3e-39 164.9 224 49.1
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 9.5e-39 164.5 223 50.7
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.5e-39 164.5 225 54.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.5e-39 164.5 231 53.2
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.1e-38 163.3 226 56.6
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.7e-38 162.2 225 52.4
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.2e-38 161.8 232 53.4
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 6.2e-38 161.8 225 48.4
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 8.1e-38 161.4 227 48.5
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.1e-37 161.0 224 50.4
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.1e-37 161.0 225 52.0
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.4e-37 160.6 232 53.0
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.3e-37 159.8 230 51.7
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.3e-37 159.8 231 51.1
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 2.3e-37 159.8 225 57.8
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.3e-37 159.8 225 53.8
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 6.8e-37 158.3 224 51.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.2e-36 157.5 232 52.2
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.6e-36 156.4 223 52.9
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.4e-36 156.0 232 52.2
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.4e-36 156.0 228 57.0
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 4.4e-36 155.6 226 50.4
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 9.8e-36 154.5 227 49.3
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-35 154.1 243 50.2
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.3e-35 154.1 226 54.0
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.7e-35 153.7 214 57.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.4e-34 150.6 227 51.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.4e-34 149.8 229 47.2
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.4e-34 149.8 222 51.4
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 4.1e-34 149.1 224 46.4
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 5.4e-34 148.7 222 48.6
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.2e-33 147.5 228 48.7
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.6e-33 147.1 225 47.6
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.6e-33 147.1 225 45.8
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 6.0e-33 145.2 230 50.4
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.3e-32 144.1 226 48.2
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.6e-32 141.4 243 49.0
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.1e-31 141.0 228 53.5
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.9e-31 140.2 223 46.2
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.9e-31 140.2 227 47.1
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.3e-31 139.4 223 44.4
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.6e-30 137.1 227 47.6
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 2.1e-30 136.7 231 41.6
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.1e-30 136.7 225 44.0
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 4.7e-30 135.6 227 52.0
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 6.2e-30 135.2 227 47.6
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.4e-29 134.0 225 44.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.4e-29 134.0 228 42.1
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.8e-29 133.7 225 40.9
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.8e-29 133.7 225 40.9
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 3.1e-29 132.9 225 40.9
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.2e-28 131.0 224 41.1
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-28 131.0 225 43.6
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.2e-28 131.0 225 40.4
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-28 130.6 225 43.6
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-28 130.6 226 42.0
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-28 130.6 225 43.6
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.5e-28 130.6 224 49.6
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-28 129.8 157 55.4
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 3.4e-28 129.4 226 41.2
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 4.4e-28 129.0 226 41.2
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 4.4e-28 129.0 226 41.6
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 9.9e-28 127.9 207 49.3
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.8e-27 125.9 225 43.1
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.8e-27 125.9 225 43.1
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 6.4e-27 125.2 226 45.6
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.4e-26 124.0 230 40.9
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.2e-26 122.9 210 41.0
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 4.1e-26 122.5 225 42.7
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 5.4e-26 122.1 207 40.6
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 5.4e-26 122.1 183 51.4
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 9.2e-26 121.3 227 45.4
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.6e-25 120.6 227 45.8
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 4.6e-25 119.0 156 54.5
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.0e-24 117.9 188 44.7
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.9e-24 115.9 223 39.0
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.6e-24 114.8 193 45.1
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.1e-23 114.4 225 42.7
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.9e-23 113.6 190 47.9
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.3e-23 112.8 151 51.0
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 4.3e-23 112.5 223 44.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.6e-22 110.5 225 42.2
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.6e-22 109.4 220 47.7
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.1e-21 107.8 188 41.5
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.4e-21 107.5 230 43.9
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-21 106.3 203 39.9
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-21 106.3 203 39.9
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.2e-21 105.5 189 42.9
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 5.2e-21 105.5 137 50.4
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 8.9e-21 104.8 170 42.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.2e-20 104.4 226 38.1
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 4.4e-20 102.4 213 38.5
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.8e-20 102.1 224 36.6
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.3e-19 100.9 164 48.8
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.2e-19 100.1 203 36.9
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 2.9e-19 99.8 180 43.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.8e-19 99.4 174 40.2
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 4.9e-19 99.0 182 40.7
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 6.4e-19 98.6 224 38.4
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-18 97.1 180 36.7
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 3.2e-18 96.3 201 37.3
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 3.2e-18 96.3 227 41.0
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.6e-17 94.0 226 38.5
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.6e-17 94.0 231 41.1
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 4.6e-17 92.4 229 35.4
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 7.8e-17 91.7 221 38.0
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 7.8e-17 91.7 227 40.1
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-16 91.3 224 38.8
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.3e-16 90.9 224 37.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 3.9e-16 89.4 184 39.7
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 3.9e-16 89.4 224 38.4
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 3.9e-16 89.4 184 39.7
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.9e-15 87.0 223 35.9
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 2.5e-15 86.7 205 34.6
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.5e-15 86.7 145 44.1
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 5.6e-15 85.5 219 38.4
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.3e-14 84.3 93 60.2
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.6e-14 82.8 128 46.9
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-13 80.5 133 43.6
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.4e-13 80.1 225 37.3
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 6.9e-13 78.6 131 49.6
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 6.9e-13 78.6 231 40.3
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.2e-12 77.8 152 38.8
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.5e-12 77.4 121 43.0
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 7.6e-12 75.1 225 36.4
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 3.8e-11 72.8 185 39.5
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 8.4e-11 71.6 178 30.9
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 4.6e-09 65.9 94 48.9
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 7.9e-09 65.1 218 34.4
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-08 64.7 60 58.3
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.8e-08 63.9 144 38.2
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.4e-07 58.5 176 33.0
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 9.6e-07 58.2 212 32.5
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.3e-06 57.8 70 48.6
Ah.09g230910 Amaranthus hybridus HOM05D003644 ORTHO05D004305 4.8e-06 55.8 91 39.6


User provided reference genes

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