Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 1.9e-135 486.1 289 100.0
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 9.5e-132 473.8 289 97.2
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 5.3e-58 228.8 255 60.8
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 2.7e-57 226.5 273 57.9
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 2.9e-56 223.0 279 56.3
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 1.1e-55 221.1 266 56.0
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 3.6e-54 216.1 285 49.1
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 5.4e-50 202.2 258 55.8
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 5.4e-50 202.2 279 50.2
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 2.0e-49 200.3 261 55.6
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 1.3e-48 197.6 272 52.9
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 1.3e-48 197.6 274 54.4
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 1.7e-48 197.2 250 48.0
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 1.7e-48 197.2 283 52.3
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 3.8e-48 196.1 255 57.6
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 5.0e-48 195.7 276 55.4
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 5.0e-48 195.7 280 51.1
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 8.6e-48 194.9 272 46.3
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 8.6e-48 194.9 287 46.7
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 1.5e-47 194.1 277 51.3
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 4.2e-47 192.6 262 52.7
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 7.2e-47 191.8 270 53.3
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 1.2e-46 191.0 274 54.0
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 2.1e-46 190.3 292 50.7
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 2.1e-46 190.3 293 53.6
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 2.8e-46 189.9 271 53.5
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 1.4e-45 187.6 262 52.7
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 1.4e-45 187.6 260 53.5
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 8.9e-45 184.9 296 42.2
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 1.2e-44 184.5 334 40.1
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 4.9e-43 179.1 270 52.2
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 6.3e-43 178.7 297 50.2
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 6.3e-43 178.7 251 50.2
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 8.3e-43 178.3 255 56.1
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 1.1e-42 177.9 265 46.4
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 3.2e-42 176.4 248 49.2
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 4.1e-42 176.0 271 48.3
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 9.2e-42 174.9 258 48.8
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 1.2e-41 174.5 247 51.4
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 1.2e-41 174.5 266 50.4
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 2.7e-41 173.3 278 50.7
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 2.7e-41 173.3 274 51.5
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 3.5e-41 172.9 317 42.0
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 3.5e-41 172.9 270 52.2
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 4.5e-41 172.6 268 50.4
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 1.7e-40 170.6 272 44.9
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 1.7e-40 170.6 294 47.3
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 5.0e-40 169.1 291 48.1
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 1.9e-39 167.2 274 48.2
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 2.5e-39 166.8 245 51.0
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 3.3e-39 166.4 266 49.6
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 4.3e-39 166.0 278 44.6
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.6e-39 165.6 278 50.7
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 1.8e-37 160.6 279 46.6
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 2.3e-37 160.2 293 47.1
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 1.2e-36 157.9 249 49.8
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 1.2e-36 157.9 281 47.7
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 1.2e-36 157.9 283 38.9
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.4e-36 156.4 370 40.5
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 3.4e-36 156.4 279 44.8
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 1.3e-35 154.5 279 43.4
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.7e-35 152.9 274 49.6
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 3.7e-35 152.9 260 48.1
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 6.4e-35 152.1 301 38.5
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 8.3e-35 151.8 294 43.2
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 1.1e-34 151.4 254 43.7
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 1.1e-34 151.4 269 39.8
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.2e-33 147.9 336 42.0
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 2.7e-33 146.7 188 45.2
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 2.7e-33 146.7 252 45.6
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 7.8e-33 145.2 156 53.2
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 1.7e-32 144.1 158 50.0
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 6.6e-32 142.1 254 46.5
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 6.6e-32 142.1 279 36.9
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 1.1e-31 141.4 269 38.7
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 1.9e-31 140.6 264 45.8
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 7.3e-31 138.7 295 37.6
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 7.3e-31 138.7 267 43.4
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 7.3e-31 138.7 252 42.9
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 7.3e-31 138.7 288 37.2
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 1.6e-30 137.5 321 35.5
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 8.0e-30 135.2 248 45.2
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 1.8e-29 134.0 330 34.2
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 2.3e-29 133.7 185 43.8
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 6.8e-29 132.1 319 38.6
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 8.9e-29 131.7 264 45.1
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 2.2e-27 127.1 267 44.6
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 2.2e-27 127.1 267 44.6
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 4.9e-27 125.9 279 35.1
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 4.9e-27 125.9 259 42.9
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 6.4e-27 125.6 289 41.2
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 1.9e-26 124.0 269 43.9
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 4.1e-26 122.9 197 57.4
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 5.4e-26 122.5 176 43.8
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 1.7e-24 117.5 298 32.9
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 6.6e-24 115.5 76 68.4
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 1.9e-23 114.0 278 39.9
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 7.3e-23 112.1 278 39.9
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 4.7e-22 109.4 160 40.0
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 1.3e-19 101.3 58 72.4
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 5.6e-15 85.9 164 40.2
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 9.6e-15 85.1 299 28.8
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 4.0e-13 79.7 55 61.8
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 3.4e-12 76.6 143 37.1
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 4.4e-12 76.3 101 38.6
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 1.9e-07 60.8 135 28.9
Eucgr.E01516 Eucalyptus grandis HOM05D007090 ORTHO05D008993 2.8e-06 57.0 66 56.1
Lj7P535T24 Lonicera japonica HOM05D007090 ORTHO05D008993 8.1e-06 55.5 72 54.2


User provided reference genes

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