Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 3.9e-131 471.5 239 100.0
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 2.5e-130 468.8 239 99.6
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 2.0e-111 406.0 240 85.8
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 4.5e-111 404.8 239 84.9
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.3e-110 403.3 239 84.9
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 1.7e-110 402.9 239 84.9
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.2e-110 402.5 239 83.7
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 2.2e-110 402.5 239 84.9
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 3.8e-110 401.7 239 84.5
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 5.0e-110 401.4 239 84.9
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 5.0e-110 401.4 241 82.6
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 6.5e-110 401.0 239 83.7
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 1.9e-109 399.4 239 84.1
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.5e-109 399.1 239 84.5
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.2e-109 398.7 226 86.7
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 3.2e-109 398.7 239 83.3
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 4.2e-109 398.3 239 84.1
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 4.2e-109 398.3 226 86.7
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.2e-109 398.3 226 86.7
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 4.2e-109 398.3 239 84.5
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 4.2e-109 398.3 238 85.7
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.2e-108 396.7 226 85.8
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 1.6e-108 396.4 230 86.5
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 2.1e-108 396.0 239 83.7
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.1e-108 396.0 226 85.8
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.1e-108 396.0 226 85.8
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 2.7e-108 395.6 247 82.2
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 1.0e-107 393.7 240 83.3
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 1.4e-107 393.3 239 82.8
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.3e-107 392.5 239 82.8
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 3.9e-107 391.7 239 81.6
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 5.2e-107 391.3 222 86.9
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 1.1e-106 390.2 239 81.6
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.0e-106 389.4 239 82.4
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.0e-106 389.4 224 84.4
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 3.3e-106 388.7 239 82.8
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 3.3e-106 388.7 227 82.8
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 3.3e-106 388.7 239 81.2
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 5.7e-106 387.9 239 82.8
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 7.4e-106 387.5 239 80.8
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.3e-105 386.7 230 83.5
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.7e-105 386.3 239 81.2
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 1.7e-105 386.3 241 82.2
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.2e-105 386.0 240 80.8
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 4.8e-105 384.8 239 80.8
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 8.2e-105 384.0 239 81.6
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.4e-104 383.3 239 81.2
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.4e-104 383.3 240 80.4
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 2.4e-104 382.5 239 82.0
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 4.1e-104 381.7 237 81.0
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 7.0e-104 380.9 224 82.1
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 7.0e-104 380.9 224 82.1
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 7.0e-104 380.9 239 79.5
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 7.0e-104 380.9 239 78.7
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 7.0e-104 380.9 239 79.1
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 1.2e-103 380.2 217 85.3
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 4.5e-103 378.3 224 81.7
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 1.3e-102 376.7 239 77.0
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 1.7e-102 376.3 239 79.9
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 2.9e-102 375.6 240 79.6
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 5.0e-102 374.8 240 77.1
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 6.5e-102 374.4 237 79.7
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 8.5e-102 374.0 239 79.5
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 1.1e-101 373.6 239 77.8
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 4.2e-101 371.7 239 78.7
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 5.5e-101 371.3 226 79.2
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 2.7e-100 369.0 224 79.5
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.4e-99 366.7 224 78.6
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 1.8e-99 366.3 226 78.8
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 3.0e-99 365.5 234 77.8
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 4.0e-99 365.2 239 77.4
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 4.0e-99 365.2 226 78.8
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 6.7e-99 364.4 229 79.5
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 6.7e-99 364.4 223 80.3
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 8.8e-99 364.0 240 75.8
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.5e-98 363.2 217 79.7
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 2.0e-98 362.8 229 77.7
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 2.6e-98 362.5 240 74.2
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 4.4e-98 361.7 239 76.6
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.3e-97 360.1 239 76.2
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 3.7e-97 358.6 217 79.3
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.1e-96 357.1 217 78.8
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.8e-96 356.3 225 79.1
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 2.4e-96 355.9 227 76.7
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 3.1e-96 355.5 217 79.7
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 9.1e-96 354.0 227 76.2
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.2e-95 353.6 227 74.9
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.6e-95 353.2 228 77.2
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 2.0e-95 352.8 227 74.9
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 2.0e-95 352.8 227 74.9
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 2.7e-95 352.4 239 77.0
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 3.5e-95 352.1 227 76.2
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 1.0e-94 350.5 227 76.2
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.0e-94 350.5 240 74.2
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 1.3e-94 350.1 228 75.0
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.7e-94 349.7 227 75.8
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 2.2e-94 349.4 227 75.8
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.2e-94 349.4 227 75.8
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 2.9e-94 349.0 228 74.6
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 3.8e-94 348.6 228 75.0
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 5.0e-94 348.2 227 74.4
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 6.5e-94 347.8 227 75.8
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 1.1e-93 347.1 333 58.9
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.5e-93 346.7 237 72.6
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 4.7e-92 341.7 228 74.6
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 6.1e-92 341.3 208 84.1
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 3.0e-91 339.0 187 89.3
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 1.2e-90 337.0 300 60.0
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 2.0e-90 336.3 240 74.2
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.3e-89 333.6 253 66.8
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 4.8e-89 331.6 224 74.6
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 8.3e-89 330.9 227 70.9
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 3.1e-88 328.9 223 70.0
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 7.2e-85 317.8 192 78.6
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 3.6e-84 315.5 198 77.8
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 2.3e-83 312.8 227 68.3
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 3.0e-83 312.4 225 67.1
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 5.2e-83 311.6 232 65.9
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 5.2e-83 311.6 217 71.0
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.2e-82 310.5 227 68.3
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 3.7e-81 305.4 224 64.7
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 7.0e-80 301.2 185 78.4
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 2.7e-79 299.3 235 66.8
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 5.6e-77 291.6 193 76.7
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.6e-71 273.5 168 77.4
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 6.6e-70 268.1 197 68.0
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 2.6e-66 256.1 153 83.0
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.3e-61 239.2 226 57.5
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 4.6e-55 218.8 157 66.9
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 1.5e-53 213.8 217 50.7
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 1.5e-42 177.2 119 68.9
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 3.6e-36 156.0 106 76.4
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 4.0e-35 152.5 204 37.7
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 2.7e-31 139.8 97 76.3
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.5e-21 107.5 159 36.5
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 3.4e-10 69.7 74 45.9


User provided reference genes

Program Settings