Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 5.3e-23 110.2 55 100.0
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 3.7e-16 87.4 55 76.4
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 6.2e-16 86.7 55 74.5
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 6.2e-16 86.7 55 76.4
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 8.2e-16 86.3 55 76.4
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 8.2e-16 86.3 55 74.5
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 1.4e-15 85.5 55 74.5
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 1.8e-15 85.1 55 76.4
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 1.8e-15 85.1 55 76.4
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 3.1e-15 84.3 55 74.5
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 72.7
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 69.1
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 72.7
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 72.7
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 76.4
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 70.9
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 74.5
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 2.0e-14 81.6 55 69.1
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 70.9
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 70.9
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 67.3
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 67.3
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 4.5e-14 80.5 55 70.9
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 7.6e-14 79.7 55 70.9
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 7.6e-14 79.7 55 70.9
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 1.0e-13 79.3 55 61.8
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 1.3e-13 79.0 55 67.3
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 58.2
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 67.3
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 63.6
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 69.1
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 69.1
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 69.1
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 67.3
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 67.3
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 69.1
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 3.8e-13 77.4 55 65.5
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 8.4e-13 76.3 55 63.6
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 1.9e-12 75.1 55 56.4
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 1.9e-12 75.1 55 67.3
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 1.9e-12 75.1 54 66.7
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 1.9e-12 75.1 54 66.7
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 58.2
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 4.2e-12 73.9 47 74.5
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 7.1e-12 73.2 53 62.3
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 9.3e-12 72.8 55 67.3
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 1.2e-11 72.4 55 56.4
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 1.2e-11 72.4 53 56.6
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 1.6e-11 72.0 55 54.5
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 1.6e-11 72.0 55 54.5
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 1.6e-11 72.0 55 61.8
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 2.1e-11 71.6 55 63.6
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 2.7e-11 71.2 54 61.1
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 3.5e-11 70.9 55 52.7
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 3.5e-11 70.9 55 52.7
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 4.6e-11 70.5 55 52.7
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 6.1e-11 70.1 54 59.3
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 6.1e-11 70.1 49 65.3
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 7.9e-11 69.7 55 60.0
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 1.8e-10 68.6 55 52.7
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 3.0e-10 67.8 53 52.8
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 3.9e-10 67.4 55 50.9
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 3.9e-10 67.4 55 50.9
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 3.9e-10 67.4 55 50.9
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 3.9e-10 67.4 55 50.9
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 6.7e-10 66.6 55 47.3
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 6.7e-10 66.6 55 58.2
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 1.1e-09 65.9 55 63.6
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 1.5e-09 65.5 52 50.0
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 1.9e-09 65.1 55 49.1
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 3.3e-09 64.3 55 45.5
unitig_744.g24380 Utricularia gibba HOM05D007944 ORTHO05D010014 9.7e-09 62.8 83 42.2
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 3.7e-08 60.8 53 54.7
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 4.8e-08 60.5 49 59.2
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 2.4e-07 58.2 48 58.3
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 5.3e-07 57.0 52 48.1
Mapoly0138s0028 Marchantia polymorpha HOM05D007944 ORTHO05D010014 5.3e-07 57.0 55 52.7


User provided reference genes

Program Settings