Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 3.3e-175 618.2 306 100.0
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 1.3e-118 430.3 301 69.1
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 1.7e-118 429.9 301 69.1
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 4.6e-116 421.8 300 67.3
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 6.6e-115 417.9 305 65.9
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 1.5e-114 416.8 304 65.8
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 8.0e-113 411.0 298 65.1
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.4e-111 405.2 304 63.8
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 5.8e-111 404.8 298 63.8
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.8e-111 404.8 304 63.5
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 5.4e-109 398.3 298 63.4
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 9.2e-109 397.5 299 63.5
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 9.2e-109 397.5 299 63.5
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 6.0e-108 394.8 300 64.7
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.3e-107 393.7 300 64.3
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.3e-107 392.9 285 66.0
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 6.6e-107 391.3 298 60.7
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 3.3e-106 389.0 303 63.0
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 1.2e-105 387.1 293 63.1
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 1.2e-105 387.1 304 62.2
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.2e-105 387.1 299 61.5
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 1.1e-104 384.0 309 62.5
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 1.4e-104 383.6 292 63.4
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 2.0e-103 379.8 284 64.4
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 2.6e-103 379.4 301 61.8
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 4.4e-103 378.6 295 61.7
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 5.8e-103 378.3 298 61.7
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 5.8e-103 378.3 287 61.7
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 1.7e-102 376.7 289 61.6
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 4.9e-102 375.2 286 61.9
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 4.1e-101 372.1 303 61.1
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 7.1e-101 371.3 300 58.0
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 5.2e-96 355.1 295 60.0
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 7.6e-95 351.3 252 67.1
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 3.8e-94 349.0 290 59.3
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.2e-93 345.5 248 67.3
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 5.1e-91 338.6 291 56.0
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 5.6e-90 335.1 301 53.2
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 7.3e-90 334.7 300 53.7
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 2.8e-89 332.8 300 53.3
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 3.6e-89 332.4 300 53.7
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 8.1e-89 331.3 299 54.2
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 8.1e-89 331.3 279 56.6
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 3.1e-88 329.3 292 53.8
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 3.1e-88 329.3 301 52.2
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 4.0e-88 328.9 278 54.7
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 6.9e-88 328.2 301 54.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.0e-87 326.6 271 59.4
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 2.9e-86 322.8 299 54.2
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 4.2e-85 318.9 305 51.5
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 5.4e-85 318.5 289 55.4
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 6.6e-83 311.6 286 54.2
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 8.7e-83 311.2 286 54.2
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.9e-82 310.1 288 53.8
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.9e-82 310.1 295 55.9
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 2.5e-82 309.7 298 53.7
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 2.5e-82 309.7 275 55.6
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 3.1e-80 302.8 301 51.5
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.9e-77 293.5 216 65.3
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 2.4e-77 293.1 293 50.2
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 4.6e-76 288.9 226 61.9
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 5.1e-75 285.4 297 49.8
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 5.6e-74 282.0 299 50.2
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 8.1e-73 278.1 238 60.1
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 3.1e-72 276.2 265 52.5
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 2.6e-71 273.1 266 52.3
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 2.6e-71 273.1 277 49.1
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 8.7e-67 258.1 342 44.7
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.1e-66 257.7 213 59.6
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 4.8e-65 252.3 183 65.6
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 8.2e-65 251.5 183 65.6
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.8e-64 250.4 183 65.0
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 9.0e-64 248.1 247 49.4
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.2e-63 247.7 277 44.8
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 2.0e-63 246.9 313 45.0
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 4.5e-63 245.7 248 48.4
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 5.8e-63 245.4 231 56.7
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.7e-62 243.8 246 48.8
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 5.7e-58 228.8 168 69.0
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 5.3e-56 222.2 191 60.2
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 3.0e-43 179.9 144 60.4
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.3e-22 111.3 191 34.6
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 1.6e-15 87.8 112 46.4


User provided reference genes

Program Settings