Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 5188.6 2554 100.0
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 3107.0 2560 61.4
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 3103.5 2573 60.9
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 3073.5 2570 61.0
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3065.8 2562 60.1
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 3061.9 2562 60.0
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3059.6 2561 60.0
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3046.5 2569 59.7
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3032.3 2560 59.6
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3031.1 2560 59.6
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2999.9 2653 57.8
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2942.5 2600 58.9
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2910.6 2560 58.4
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2909.8 2562 58.6
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2895.1 2421 60.7
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2858.2 2586 56.9
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2853.2 2560 57.7
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2840.1 2593 56.7
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2828.5 2561 56.8
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2806.9 2567 57.2
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2806.5 2564 56.7
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2796.9 2569 56.2
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2796.1 2576 55.7
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2793.8 2567 56.2
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2768.0 2572 55.8
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2733.0 2580 55.1
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2716.4 2573 54.4
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2707.2 2572 55.7
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2656.3 2555 54.6
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2634.0 2562 54.0
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2618.2 2551 54.3
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2614.7 2561 53.8
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2603.9 2562 53.7
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2583.1 2576 53.5
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2582.7 2560 52.8
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2573.9 2560 52.7
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2571.2 2571 53.2
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2563.9 2580 52.8
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2537.7 2517 53.1
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2532.7 2571 52.0
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2512.6 2595 52.2
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2497.2 2588 51.9
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2461.8 2635 50.3
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2411.3 2403 53.3
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2380.9 2589 50.7
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2355.1 2565 49.4
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2353.6 2571 49.5
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2349.7 2604 49.9
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2295.0 2572 48.7
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2281.1 2559 49.0
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2280.8 2583 48.7
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2273.8 2577 48.6
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2265.3 2563 48.7
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2260.3 2583 47.7
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2257.3 2574 47.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2256.5 2563 48.7
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2254.6 2583 47.7
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2226.4 2568 47.7
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2225.7 2567 47.0
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2225.3 2571 47.6
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2210.6 2604 46.8
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2199.9 2590 47.4
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2199.1 2574 47.1
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2194.9 2575 47.0
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2193.3 2571 47.0
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2187.9 2582 47.1
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2185.2 2571 46.8
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2164.8 2577 47.1
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2126.7 2571 46.0
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2101.2 2562 46.1
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 2091.6 1935 56.6
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2083.9 2568 45.7
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2066.2 2569 45.3
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2051.9 2569 45.0
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2021.9 2592 44.5
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1965.3 2547 43.4
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1951.4 2431 45.6
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1894.0 2544 43.1
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1887.5 1880 53.5
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1812.7 1974 50.7
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1750.3 2582 40.2
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1673.7 1934 47.9
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1616.7 2608 38.6
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1535.8 2588 37.5
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1427.5 1337 55.1
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1370.1 1527 49.3
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1369.4 1369 51.7
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1368.2 1537 50.0
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1358.6 1571 48.4
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1242.3 1364 49.2
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1185.2 1375 47.3
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1171.8 1103 56.2
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.7e-311 1074.7 1354 45.2
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.5e-308 1064.3 2778 29.7
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.2e-297 1028.1 1832 37.3
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 1.4e-295 1021.1 1072 51.2
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 6.0e-262 909.4 1072 47.0
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 6.0e-262 909.4 1072 47.0
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 1.3e-261 908.3 1192 42.3
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 2.5e-260 904.0 1100 46.4
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 8.2e-243 845.9 1035 43.9
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.6e-228 797.7 1598 34.3
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 4.2e-207 727.2 1207 37.6
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 9.4e-207 726.1 516 67.6
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 8.8e-205 719.5 575 61.6
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 5.7e-196 690.3 635 54.0
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.8e-181 642.1 561 58.1
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.3e-176 625.2 564 58.3
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 8.6e-176 623.2 762 47.4
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.2e-174 619.4 1111 37.4
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 4.4e-172 610.9 2062 28.1
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.5e-167 595.1 680 45.7
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 2.6e-156 558.5 462 63.6
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 9.9e-148 530.0 428 60.0
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.9e-145 520.4 758 38.4
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 2.4e-141 508.8 465 50.8
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.8e-112 412.9 542 45.6
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 2.0e-111 409.5 1760 26.0
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.0e-111 409.5 952 32.1
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 2.6e-108 399.1 314 63.7
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 5.7e-95 354.8 227 71.8
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 9.4e-90 337.4 395 48.1
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.4e-79 302.0 198 70.7
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.4e-77 295.0 229 62.9
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 2.0e-71 276.6 183 70.5
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 9.2e-69 267.7 634 33.1
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.0e-67 264.2 218 59.2
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 2.3e-67 263.1 405 42.2
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 5.6e-66 258.5 238 55.0
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.2e-52 214.2 420 37.1
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.4e-48 199.9 381 37.5
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 1.7e-46 193.7 226 42.0
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 7.1e-45 188.3 120 71.7
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.3e-43 184.1 136 65.4
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 5.6e-42 178.7 264 38.6
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.8e-41 176.4 114 71.1
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.2e-39 171.0 114 68.4
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 1.7e-38 167.2 553 29.3
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 3.5e-36 159.5 219 39.7
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 1.3e-33 151.0 118 63.6
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 2.0e-31 143.7 102 71.6
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.7e-30 140.6 286 32.5
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 2.4e-29 136.7 200 36.5
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 5.4e-29 135.6 181 37.6
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 7.1e-29 135.2 88 77.3
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 4.6e-28 132.5 232 34.1
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 2.3e-27 130.2 74 82.4
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.7e-25 122.9 263 32.3
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 6.9e-24 118.6 506 26.5
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 7.6e-23 115.2 145 42.1
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-21 110.9 103 55.3
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 1.1e-18 101.3 121 48.8
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.6e-17 97.4 302 25.2
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.0e-14 88.2 120 40.8
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 1.0e-14 88.2 125 45.6
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 4.9e-14 85.9 154 38.3
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 3.2e-13 83.2 57 75.4
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 3.3e-10 73.2 48 62.5
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.2e-07 64.7 119 32.8
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 5.9e-07 62.4 76 42.1
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 7.7e-07 62.0 77 48.1
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.0e-06 61.6 111 36.9
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 5.0e-06 59.3 94 41.5


User provided reference genes

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