Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 2220.7 1127 100.0
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1571.6 1127 70.7
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1566.6 1143 69.4
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1563.9 1134 70.6
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1550.8 1126 69.6
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1541.6 1126 69.3
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1540.0 1137 69.3
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1540.0 1126 69.1
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1537.3 1128 69.2
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1536.9 1137 69.2
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1535.8 1143 68.1
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1532.3 1137 69.0
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1508.8 1142 68.6
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1481.5 1137 68.1
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1481.1 1135 67.0
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1475.7 1144 67.3
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1458.7 1139 65.8
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1458.7 1152 66.4
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1455.7 1135 66.1
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1442.9 1137 65.2
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1441.4 1126 65.5
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1434.5 1139 65.3
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1434.1 1134 65.7
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1405.2 1141 64.3
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1393.3 1142 63.2
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1388.2 1135 63.7
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1384.8 1134 63.5
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1384.0 1134 63.5
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1381.3 1138 64.1
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1375.9 1144 64.3
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1375.9 1139 63.7
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1372.8 1139 63.6
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1372.8 1132 63.5
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1364.4 1144 61.8
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1359.4 1135 62.9
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1357.8 1144 62.4
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1357.8 1138 63.9
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1357.4 1140 62.5
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1355.1 1134 62.7
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1355.1 1146 61.8
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1354.0 1134 62.1
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1352.4 1134 61.9
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1347.8 1172 61.3
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1340.9 1136 61.8
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1340.5 1129 62.5
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1337.0 1133 62.5
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1321.2 1127 62.1
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1306.2 1135 61.8
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1301.2 1138 60.5
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1293.5 1095 62.5
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1276.9 1141 58.5
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1265.4 1013 62.9
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1263.4 1142 58.7
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1263.4 1143 58.4
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1263.1 1142 58.7
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1262.3 1141 58.5
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1258.8 1144 57.3
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1258.0 1132 59.5
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1247.6 1137 58.1
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1233.0 1141 57.6
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1229.2 1139 58.2
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1228.4 1134 58.8
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1227.6 1082 59.3
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1221.8 1140 56.0
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1219.1 1143 57.4
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1216.1 1146 57.4
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1213.7 1142 57.0
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1211.8 1137 56.9
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1209.9 1155 56.9
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1208.7 1140 56.6
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1207.6 1134 58.6
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1207.2 1140 56.8
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1203.7 1145 56.2
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1190.6 1142 56.7
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1185.2 1154 55.9
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1182.5 1135 55.6
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1167.9 1026 59.4
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1165.6 1138 55.7
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1161.0 1137 55.3
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1160.2 1137 55.1
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1159.4 1137 55.1
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1156.0 1155 54.2
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1140.2 1138 53.2
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1137.1 1145 53.6
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1121.3 1163 53.1
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1110.1 1176 52.5
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 1.5e-310 1069.7 1109 52.4
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 1.5e-305 1053.1 1143 51.2
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 4.3e-297 1025.0 1144 50.3
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 1.7e-293 1013.1 910 58.9
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 8.8e-290 1000.7 1127 50.5
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 8.0e-275 951.0 640 73.3
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.3e-273 945.7 652 72.1
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.7e-264 916.8 765 61.2
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 9.4e-260 901.0 1148 46.3
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 2.0e-249 866.7 1130 44.9
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.2e-243 847.4 645 66.0
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 4.7e-227 792.3 1227 39.6
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 1.7e-224 783.9 640 62.2
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 8.6e-221 771.5 608 66.9
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 9.5e-220 768.1 1167 41.7
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.2e-217 761.1 559 68.5
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 1.4e-215 754.2 641 59.9
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 5.6e-212 742.3 1243 38.1
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 7.8e-206 721.8 558 65.4
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 4.5e-185 652.9 653 52.1
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.5e-177 627.9 709 50.1
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 1.9e-175 620.9 463 69.1
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.0e-169 600.9 493 64.3
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.2e-168 597.4 514 62.3
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 1.0e-152 545.4 494 60.1
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 5.6e-95 353.6 1602 25.5
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 3.2e-90 337.8 520 41.2
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 6.2e-78 297.0 279 55.9
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.4e-77 295.8 741 34.8
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 7.1e-74 283.5 555 34.2
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 6.7e-72 276.9 585 35.4
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-65 255.8 481 35.3
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 4.2e-58 231.1 385 40.5
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 7.2e-58 230.3 556 31.5
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 2.5e-50 205.3 518 31.5
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 3.1e-45 188.3 673 28.1
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 3.1e-45 188.3 673 28.1
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-43 183.0 220 47.3
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-42 179.1 187 49.7
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-39 167.5 266 37.2
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-38 166.4 373 34.9
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 4.5e-36 157.9 220 43.6
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 8.8e-32 143.7 202 47.0
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 4.4e-31 141.4 148 53.4
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-27 129.8 212 40.6
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 1.5e-26 126.3 79 73.4
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-26 125.9 120 55.8
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-25 122.9 110 50.9
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-19 103.6 210 33.8
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-19 103.6 210 33.8
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 5.6e-18 97.8 116 46.6
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 9.5e-18 97.1 240 30.0
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 8.0e-17 94.0 53 81.1
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 5.7e-15 87.8 147 40.8
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 5.4e-13 81.3 54 68.5
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 1.6e-12 79.7 68 57.4
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 1.0e-11 77.0 58 60.3
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-08 66.2 150 35.3


User provided reference genes

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