Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.3e-105 385.6 194 100.0
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.2e-93 346.7 194 89.7
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.6e-93 345.5 194 89.7
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.0e-92 343.6 194 87.6
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.3e-92 343.2 194 87.1
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.3e-92 343.2 194 88.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.3e-92 343.2 194 89.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.3e-92 343.2 193 89.1
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.9e-92 342.0 194 87.1
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.8e-92 341.7 197 86.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.1e-91 340.1 194 87.1
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 4.2e-91 338.2 194 88.7
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 7.2e-91 337.4 194 87.6
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.6e-90 334.7 194 84.5
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 7.9e-90 334.0 194 85.6
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.0e-89 333.6 197 84.8
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.0e-89 333.6 198 84.3
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.4e-89 333.2 194 85.1
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.3e-89 332.4 194 85.6
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.9e-89 331.6 194 84.5
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 86.1
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 82.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.3e-88 328.6 194 84.0
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.3e-88 328.2 196 83.2
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.7e-88 327.8 201 80.6
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 7.4e-88 327.4 194 84.5
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 9.7e-88 327.0 194 83.5
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.3e-87 326.6 194 83.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 83.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 83.5
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.2e-87 325.9 194 82.0
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.2e-87 325.9 201 82.6
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.2e-87 325.9 198 82.3
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 4.8e-87 324.7 194 83.5
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.3e-87 324.3 195 83.6
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.1e-86 323.6 194 83.5
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.4e-86 323.2 194 85.1
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.8e-86 322.8 199 80.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-86 322.4 197 81.7
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 82.0
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 82.0
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 83.0
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.1e-86 322.0 195 83.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 83.0
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 4.1e-86 321.6 199 80.9
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 4.1e-86 321.6 194 83.0
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.1e-86 321.6 194 83.0
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 4.1e-86 321.6 194 80.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 4.1e-86 321.6 194 80.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 5.3e-86 321.2 194 82.5
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 5.3e-86 321.2 194 81.4
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.3e-86 321.2 196 82.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 9.1e-86 320.5 199 79.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 9.1e-86 320.5 199 79.9
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.2e-85 320.1 194 81.4
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.5e-85 319.7 201 80.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 83.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.0e-85 319.3 199 80.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 82.0
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.0e-85 319.3 201 77.6
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.6e-85 318.9 201 79.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 2.6e-85 318.9 199 79.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 3.4e-85 318.5 195 82.6
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.4e-85 318.5 194 81.4
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.4e-85 318.5 198 81.8
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.4e-85 318.5 204 77.5
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 201 79.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 201 79.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.0e-84 317.0 199 78.4
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-84 316.6 201 78.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-84 316.6 200 79.5
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.3e-84 316.6 197 81.7
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.7e-84 316.2 201 76.6
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.9e-84 315.5 198 78.3
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.8e-84 315.1 196 80.1
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 3.8e-84 315.1 203 77.8
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-84 315.1 202 78.7
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 6.5e-84 314.3 196 80.1
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.5e-84 314.3 198 78.8
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.5e-84 314.3 217 75.1
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.5e-84 314.3 203 75.4
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-83 313.5 206 77.2
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.9e-83 312.8 199 77.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 82.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.9e-83 312.8 201 77.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 80.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 3.2e-83 312.0 199 78.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 3.2e-83 312.0 199 78.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 4.2e-83 311.6 199 77.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 4.2e-83 311.6 199 77.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 5.5e-83 311.2 194 79.9
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 9.4e-83 310.5 192 79.2
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.2e-82 310.1 199 77.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.2e-82 310.1 194 78.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 77.8
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 80.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.1e-82 309.3 198 78.3
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.7e-82 308.9 193 80.8
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.4e-81 306.6 198 78.3
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.4e-81 306.6 194 81.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.0e-81 305.4 200 78.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 3.9e-81 305.1 200 77.5
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.1e-81 304.7 199 78.4
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 5.1e-81 304.7 200 77.5
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 6.7e-81 304.3 194 78.9
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 8.8e-81 303.9 199 75.9
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 194 79.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 5.7e-80 301.2 200 77.5
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 7.4e-80 300.8 200 78.0
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 9.7e-80 300.4 175 85.7
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 9.7e-80 300.4 244 66.8
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.3e-79 300.1 202 75.7
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.2e-79 299.3 210 72.4
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.7e-79 298.5 186 80.1
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.1e-78 295.0 196 73.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.6e-77 292.4 180 81.7
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.6e-77 292.4 194 75.8
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 4.5e-77 291.6 223 68.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 7.7e-77 290.8 211 72.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.7e-76 289.7 192 72.4
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 2.2e-76 289.3 198 75.8
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.0e-76 288.1 176 81.8
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.5e-75 285.8 175 80.6
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 5.5e-75 284.6 180 79.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.6e-74 283.1 183 77.6
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.1e-74 282.7 197 69.0
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.3e-73 279.3 196 69.4
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.3e-73 279.3 201 72.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.6e-72 275.8 215 68.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.4e-72 275.0 194 71.6
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 9.7e-72 273.9 189 72.5
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 8.2e-71 270.8 208 69.2
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.7e-69 265.8 187 69.0
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 5.9e-69 264.6 213 65.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.3e-68 263.5 185 69.2
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.8e-68 261.9 233 63.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 5.5e-67 258.1 187 72.2
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 8.0e-66 254.2 183 71.6
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.2e-64 250.4 180 66.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.2e-63 246.1 203 60.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 5.4e-62 241.5 194 64.9
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.0e-60 237.3 177 68.4
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.2e-58 230.3 201 63.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 2.4e-54 216.1 154 72.7
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.6e-50 202.2 117 88.0
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 4.0e-49 198.7 116 83.6
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 7.5e-48 194.5 177 59.3
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 5.6e-43 178.3 99 91.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 3.1e-41 172.6 188 56.4
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.6e-40 169.5 94 90.4
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.4e-40 168.7 99 86.9
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.7e-39 166.8 97 79.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.0e-32 143.3 79 83.5
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 9.2e-30 134.4 197 47.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.6e-29 133.7 70 94.3
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 4.6e-29 132.1 97 71.1
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.0e-28 129.4 70 77.1
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.0e-28 129.4 98 68.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 8.9e-25 117.9 190 40.0
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 5.8e-24 115.2 193 39.9
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.6e-21 105.5 100 62.0
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.0e-20 102.8 71 73.2
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 6.6e-20 101.7 194 40.7
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 7.3e-19 98.2 194 40.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.8e-17 93.6 70 61.4
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 8.9e-17 91.3 65 67.7
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.0e-16 90.1 62 66.1
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.1e-13 80.1 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 4.6e-13 79.0 62 64.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.3e-12 77.4 167 34.1
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.0e-09 65.9 72 51.4


User provided reference genes

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