Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 0.0e+00 1684.5 821 100.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 3.8e-258 895.2 864 55.0
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 4.3e-254 881.7 871 53.0
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 3.4e-251 872.1 883 53.2
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.5e-243 846.7 838 52.5
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.3e-239 833.6 904 50.6
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 2.9e-234 815.8 1014 46.4
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 1.0e-231 807.4 876 50.1
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 2.5e-230 802.7 909 50.2
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.5e-230 802.7 858 50.7
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.0e-227 793.1 905 50.1
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 4.2e-225 785.4 909 49.7
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 2.3e-223 779.6 840 50.4
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 5.9e-219 765.0 1034 44.9
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 5.9e-219 765.0 834 49.5
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.4e-215 753.8 1003 42.9
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 4.0e-215 752.3 1075 41.3
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 5.3e-212 741.9 875 47.0
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 4.5e-211 738.8 874 46.6
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 7.7e-211 738.0 1014 42.8
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.9e-210 736.1 931 44.8
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.9e-209 733.4 984 42.8
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 7.2e-209 731.5 905 44.8
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 9.4e-209 731.1 749 52.2
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 3.4e-206 722.6 896 43.2
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.0e-202 711.1 853 47.9
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.3e-202 710.7 926 43.0
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 5.0e-202 708.8 854 45.4
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.9e-201 706.8 867 46.3
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 7.2e-201 704.9 1033 41.8
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 4.0e-199 699.1 843 47.0
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 4.0e-199 699.1 824 47.7
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 8.8e-199 698.0 976 41.6
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 2.6e-198 696.4 890 44.0
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 3.4e-198 696.0 1018 41.3
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 3.4e-198 696.0 851 46.8
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 9.8e-198 694.5 977 41.7
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 1.3e-197 694.1 840 46.5
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.3e-197 694.1 834 45.6
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.7e-197 693.7 949 43.0
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.7e-197 693.7 949 43.0
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.4e-196 690.6 869 45.5
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 9.1e-196 688.0 841 46.3
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 1.6e-195 687.2 848 46.1
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.0e-194 684.5 834 46.0
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.0e-194 684.5 834 46.0
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.0e-194 684.5 836 45.9
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.0e-194 684.5 884 43.7
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.7e-194 683.7 837 45.3
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.7e-194 683.7 816 45.3
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 8.6e-194 681.4 1054 39.3
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 1.9e-193 680.2 910 43.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 5.6e-193 678.7 932 42.5
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 9.5e-193 677.9 938 42.4
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 9.5e-193 677.9 1082 38.9
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 8.0e-192 674.9 809 45.5
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 3.0e-191 672.9 962 41.5
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 5.2e-191 672.2 836 44.6
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.6e-190 669.8 938 42.3
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 5.7e-190 668.7 959 41.9
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 7.5e-190 668.3 848 45.2
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 1.3e-189 667.5 912 41.0
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.7e-189 667.2 1052 38.7
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.9e-189 666.4 1051 38.4
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.7e-189 666.0 862 44.0
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 8.3e-189 664.8 1014 39.2
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.4e-188 664.1 711 50.2
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.2e-187 661.0 1059 38.4
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.3e-186 656.8 1042 39.4
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 4.3e-185 652.5 877 43.3
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.4e-183 647.5 892 43.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.8e-183 647.1 859 43.2
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 2.3e-183 646.7 1082 37.1
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.9e-180 637.1 974 38.8
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 7.0e-180 635.2 883 42.2
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.6e-179 634.0 1134 36.8
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.0e-178 629.0 1079 38.2
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.5e-177 626.7 885 41.8
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 4.3e-177 625.9 1036 37.3
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 5.2e-175 619.0 912 40.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.5e-174 617.5 1009 37.1
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 4.4e-174 615.9 1002 37.5
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.2e-173 613.6 1044 37.5
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 6.4e-173 612.1 895 41.8
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 5.4e-172 609.0 735 45.9
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.3e-170 603.6 798 44.6
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.2e-168 597.8 835 41.8
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 1.1e-167 594.7 852 40.5
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 4.4e-166 589.3 589 51.6
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 7.6e-166 588.6 821 43.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.4e-164 583.6 754 46.2
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 7.1e-164 582.0 920 39.9
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.7e-162 577.4 896 39.7
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 5.6e-161 572.4 840 43.0
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 2.4e-159 567.0 807 41.3
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 4.0e-159 566.2 992 36.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.2e-155 554.7 1060 34.6
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 9.0e-151 538.5 616 45.8
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.6e-145 519.2 814 40.9
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.4e-143 514.6 1173 31.3
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 9.3e-140 501.9 810 38.8
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 5.3e-135 486.1 923 35.3
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.9e-132 477.6 818 37.5
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.5e-131 473.4 627 43.1
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 7.9e-131 472.2 632 43.4
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 2.6e-126 457.2 669 40.8
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 7.4e-121 439.1 782 37.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 6.3e-120 436.0 365 57.3
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.2e-110 405.2 671 35.9
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 7.7e-110 402.5 765 33.2
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.6e-107 394.8 490 41.6
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 5.0e-101 373.2 810 32.6
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 3.6e-99 367.1 755 32.1
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 3.7e-96 357.1 325 55.7
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 1.5e-73 282.0 524 35.7
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.3e-64 252.3 292 46.2
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 6.6e-61 240.0 229 52.8
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.1e-59 233.0 227 57.7
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.2e-57 229.2 443 35.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.0e-57 228.4 214 54.7
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.9e-56 223.8 237 55.3
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.1e-55 222.6 283 45.2
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.1e-55 222.6 299 46.5
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 8.9e-50 203.0 339 34.5
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 9.9e-49 199.5 264 40.2
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 9.6e-44 183.0 131 61.1
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 7.6e-41 173.3 208 49.0
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.3e-37 162.5 299 35.1
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.1e-36 159.5 315 34.6
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 4.3e-36 157.5 191 43.5
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.3e-36 156.8 356 33.7
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.1e-35 155.2 248 42.3
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 3.1e-34 151.4 219 42.9
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.4e-33 147.9 209 42.1
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 3.5e-30 137.9 207 40.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.0e-30 137.1 209 38.8
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.4e-26 125.2 530 23.4
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 4.5e-25 120.9 207 38.2
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-22 112.5 84 60.7
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 2.7e-22 111.7 183 36.1
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.1e-18 99.8 189 36.5
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 1.5e-17 95.9 258 28.7
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.1e-15 89.7 184 34.8
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.9e-15 89.0 113 46.9
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 4.6e-14 84.3 157 37.6
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 3.0e-13 81.6 98 48.0
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.8e-11 75.1 126 37.3
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 7.6e-09 67.0 193 32.6
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 4.6e-06 57.8 40 62.5


User provided reference genes

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