Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 8.4e-41 169.9 82 100.0
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 3.5e-23 111.3 80 67.5
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 6.7e-22 107.1 77 72.7
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.5e-21 105.9 75 72.0
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.9e-21 105.5 77 64.9
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 2.5e-21 105.1 78 69.2
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.6e-21 104.0 77 66.2
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.3e-20 102.8 80 66.2
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 2.8e-20 101.7 76 61.8
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 2.8e-20 101.7 80 63.8
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.8e-20 100.9 80 65.0
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 6.2e-20 100.5 76 69.7
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.1e-19 99.8 80 65.0
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.1e-19 99.8 82 59.8
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.1e-19 99.8 77 68.8
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-19 99.4 80 65.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-19 99.4 80 65.0
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.4e-19 98.6 73 68.5
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.1e-19 98.2 76 65.8
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 3.1e-19 98.2 84 58.3
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.0e-18 95.5 79 68.4
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.6e-18 95.1 80 67.5
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 3.4e-18 94.7 80 60.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.4e-18 94.7 77 63.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 5.8e-18 94.0 75 62.7
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 5.8e-18 94.0 77 66.2
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.8e-18 94.0 82 57.3
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 5.8e-18 94.0 81 58.0
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 7.6e-18 93.6 79 60.8
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.7e-17 92.4 78 62.8
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.7e-17 92.4 78 62.8
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.7e-17 92.4 76 60.5
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.2e-17 92.0 78 57.7
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 2.2e-17 92.0 83 57.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.2e-17 92.0 75 61.3
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.9e-17 90.9 76 60.5
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 4.9e-17 90.9 73 61.6
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.9e-17 90.9 73 67.1
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.1e-16 89.7 79 62.0
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.1e-16 89.7 76 61.8
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.1e-16 89.7 79 59.5
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.4e-16 89.4 80 61.2
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.4e-16 89.4 77 58.4
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.5e-16 88.6 79 59.5
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 4.2e-16 87.8 70 62.9
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 4.2e-16 87.8 78 57.7
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 4.2e-16 87.8 76 60.5
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 5.5e-16 87.4 79 58.2
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.1e-16 87.0 79 63.3
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 9.3e-16 86.7 76 57.9
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.1e-15 85.5 79 58.2
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 2.7e-15 85.1 76 57.9
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.5e-15 84.7 80 58.8
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 3.5e-15 84.7 80 56.2
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 3.5e-15 84.7 79 57.0
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 4.6e-15 84.3 77 61.0
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 6.0e-15 84.0 85 52.9
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 6.0e-15 84.0 79 55.7
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.9e-15 83.6 79 57.0
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 7.9e-15 83.6 79 55.7
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.0e-14 83.2 75 58.7
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.3e-14 82.8 78 55.1
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.3e-14 82.8 75 58.7
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-14 82.8 76 59.2
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.3e-14 82.8 71 63.4
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 1.8e-14 82.4 84 54.8
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.3e-14 82.0 84 53.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.3e-14 82.0 80 53.8
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.3e-14 82.0 73 65.8
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 2.3e-14 82.0 74 55.4
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.0e-14 81.6 81 59.3
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.0e-14 81.6 84 59.5
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 5.1e-14 80.9 73 57.5
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 5.1e-14 80.9 84 53.6
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 6.7e-14 80.5 84 53.6
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 6.7e-14 80.5 88 55.7
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 8.7e-14 80.1 80 55.0
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.1e-13 79.7 77 57.1
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.5e-13 79.3 82 50.0
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.5e-13 79.3 78 55.1
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.9e-13 79.0 82 51.2
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 2.5e-13 78.6 79 57.0
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 3.3e-13 78.2 75 56.0
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.3e-13 78.2 81 56.8
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.3e-13 78.2 76 53.9
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 4.3e-13 77.8 78 53.8
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 4.3e-13 77.8 75 56.0
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 4.3e-13 77.8 78 55.1
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.7e-13 77.4 80 51.2
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 5.7e-13 77.4 79 51.9
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 7.4e-13 77.0 75 54.7
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 9.6e-13 76.6 81 53.1
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 9.6e-13 76.6 84 48.8
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.3e-12 76.3 82 54.9
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.3e-12 76.3 74 52.7
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.3e-12 76.3 74 52.7
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.6e-12 75.9 82 54.9
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.6e-12 75.9 84 51.2
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.6e-12 75.9 79 54.4
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.1e-12 75.5 76 52.6
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 2.1e-12 75.5 82 47.6
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.1e-12 75.5 77 55.8
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.8e-12 75.1 83 50.6
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.8e-12 75.1 82 53.7
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 3.7e-12 74.7 87 51.7
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.7e-12 74.7 76 55.3
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 3.7e-12 74.7 83 51.8
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 4.8e-12 74.3 83 49.4
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.8e-12 74.3 83 51.8
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 8.2e-12 73.6 81 50.6
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 8.2e-12 73.6 81 49.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 8.2e-12 73.6 74 55.4
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 1.4e-11 72.8 80 51.2
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.4e-11 72.8 80 53.8
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.4e-11 72.8 76 53.9
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-11 72.4 83 45.8
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-11 72.4 79 48.1
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.8e-11 72.4 83 45.8
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.8e-11 72.4 79 48.1
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 1.8e-11 72.4 79 53.2
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 1.8e-11 72.4 79 53.2
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.4e-11 72.0 76 55.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 6.9e-11 70.5 84 42.9
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 9.0e-11 70.1 85 44.7
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.5e-10 69.3 88 46.6
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 2.0e-10 68.9 71 52.1
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 2.0e-10 68.9 80 51.2
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 2.6e-10 68.6 72 48.6
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 2.6e-10 68.6 78 50.0
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 3.4e-10 68.2 76 50.0
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 5.8e-10 67.4 76 48.7
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 5.8e-10 67.4 76 48.7
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 5.8e-10 67.4 69 52.2
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 7.6e-10 67.0 78 51.3
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 1.0e-09 66.6 71 50.7
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.0e-09 66.6 79 53.2
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.0e-09 66.6 73 47.9
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 1.0e-09 66.6 73 47.9
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.3e-09 66.2 79 48.1
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.3e-09 66.2 79 48.1
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 1.7e-09 65.9 77 45.5
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.2e-09 65.5 54 59.3
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.2e-09 65.5 76 50.0
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 2.2e-09 65.5 73 45.2
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 2.9e-09 65.1 59 57.6
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.8e-09 64.7 88 47.7
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 3.8e-09 64.7 50 66.0
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 5.0e-09 64.3 78 48.7
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 6.5e-09 63.9 79 44.3
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 6.5e-09 63.9 65 55.4
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 8.4e-09 63.5 78 52.6
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 1.1e-08 63.2 72 50.0
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.1e-08 63.2 70 48.6
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.1e-08 63.2 78 47.4
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.4e-08 62.8 82 42.7
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.4e-08 62.8 82 42.7
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.4e-08 62.8 82 42.7
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.4e-08 62.8 82 42.7
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.5e-08 62.0 79 44.3
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.5e-08 62.0 81 46.9
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 2.5e-08 62.0 79 49.4
RcHm_v2.0_Chr7g0179751 Rosa chinensis HOM05D003533 ORTHO05D004009 3.2e-08 61.6 76 50.0
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 4.2e-08 61.2 74 51.4
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 4.2e-08 61.2 75 44.0
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 5.5e-08 60.8 77 45.5
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 7.1e-08 60.5 84 42.9
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 7.1e-08 60.5 78 43.6
ClCG06G016690 Citrullus lanatus HOM05D003533 ORTHO05D004009 9.3e-08 60.1 70 55.7
FvH4_5g16360 Fragaria vesca HOM05D000073 ORTHO05D035262 9.3e-08 60.1 57 54.4
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 1.2e-07 59.7 75 48.0
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 3.5e-07 58.2 72 41.7
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 6.1e-07 57.4 66 47.0
Rhsim08G0167800 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.9e-07 57.0 50 62.0
Prupe.1G261200 Prunus persica HOM05D003533 ORTHO05D004009 1.3e-06 56.2 80 47.5
CiPaw.03G159600 Carya illinoinensis HOM05D007037 ORTHO05D006691 1.8e-06 55.8 81 42.0
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.8e-06 55.8 69 40.6
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.8e-06 55.8 34 76.5
Sabra12G0053900 Salix brachista HOM05D003533 ORTHO05D004009 3.0e-06 55.1 79 44.3
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 3.9e-06 54.7 65 46.2
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 6.7e-06 53.9 69 39.1


User provided reference genes

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