Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 0.0e+00 1409.8 755 100.0
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 2.6e-261 905.6 756 69.2
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.8e-106 390.6 779 39.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 6.4e-103 379.4 794 38.0
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.9e-102 377.9 798 39.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.2e-101 375.2 816 38.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 5.8e-96 356.3 642 43.0
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.8e-95 353.6 788 38.2
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.4e-94 350.9 803 36.7
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.6e-88 330.9 766 36.7
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 7.6e-88 329.3 776 36.3
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 4.9e-87 326.6 796 35.6
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.1e-85 321.2 797 36.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.5e-83 315.1 769 33.9
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 5.6e-83 313.2 729 38.8
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.1e-81 307.4 767 33.9
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 9.0e-81 305.8 789 34.9
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.3e-74 285.4 786 33.7
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 6.2e-74 283.1 834 33.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 7.6e-72 276.2 710 35.6
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-71 275.0 764 34.4
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.2e-71 274.6 771 33.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 6.5e-71 273.1 770 33.4
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 9.3e-70 269.2 810 32.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-68 265.4 786 33.5
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.8e-68 265.0 621 35.1
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-68 265.0 767 33.6
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.3e-68 264.6 791 33.2
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.9e-67 261.5 772 32.8
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 9.7e-67 259.2 772 32.0
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.6e-66 258.5 783 34.0
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 2.9e-63 247.7 791 33.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 5.0e-63 246.9 773 33.1
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 6.5e-63 246.5 807 32.6
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 6.5e-63 246.5 810 30.0
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 8.5e-63 246.1 773 34.2
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 5.5e-62 243.4 791 31.7
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 9.4e-62 242.7 472 40.0
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 9.4e-62 242.7 816 31.2
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.2e-61 242.3 771 30.5
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.0e-60 239.2 363 44.1
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 6.7e-60 236.5 657 35.6
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.5e-59 235.3 412 41.5
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.3e-59 234.2 772 32.8
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.4e-59 233.0 767 29.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.3e-58 232.3 789 31.6
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 5.3e-57 226.9 790 30.8
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 2.6e-56 224.6 798 31.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 7.7e-56 223.0 767 31.6
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 3.8e-55 220.7 593 35.8
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 5.0e-55 220.3 765 32.8
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 4.2e-54 217.2 777 32.0
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 4.2e-54 217.2 775 31.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 4.7e-53 213.8 788 30.5
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 8.8e-52 209.5 582 34.5
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 5.7e-51 206.8 839 29.2
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.7e-50 205.3 651 30.0
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.8e-50 204.5 446 37.7
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.7e-50 204.1 785 27.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.7e-50 204.1 778 28.5
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.4e-49 202.2 825 29.3
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.4e-49 201.4 757 31.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.1e-49 201.1 465 37.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.4e-48 197.6 770 29.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 7.7e-48 196.4 676 31.1
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.9e-46 191.8 820 31.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.5e-46 191.4 383 38.9
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 4.2e-46 190.7 555 33.2
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.8e-44 185.3 786 28.5
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.3e-44 184.9 734 30.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 5.2e-44 183.7 447 37.1
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.1e-43 182.6 458 37.1
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.1e-43 182.6 562 32.6
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 7.4e-43 179.9 768 29.6
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.3e-42 179.1 645 30.9
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.3e-42 179.1 225 53.3
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 6.3e-42 176.8 660 32.4
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.4e-41 174.9 674 29.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 5.3e-41 173.7 353 38.2
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 7.0e-41 173.3 433 34.4
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.0e-40 171.8 350 38.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.0e-39 169.5 669 30.0
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.8e-39 167.5 514 32.3
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 2.7e-37 161.4 520 35.2
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.7e-37 160.6 514 32.1
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.0e-36 159.5 319 42.9
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-36 159.5 510 31.0
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.4e-36 159.1 284 38.4
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.4e-36 159.1 156 56.4
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.0e-36 157.9 235 43.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.0e-36 157.5 281 40.6
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 5.2e-36 157.1 577 30.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.5e-35 155.6 786 29.5
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 7.5e-35 153.3 416 37.7
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 7.5e-35 153.3 311 39.5
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 9.7e-35 152.9 271 39.5
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.2e-34 151.8 380 34.2
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.4e-33 148.3 545 28.8
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.4e-33 148.3 140 57.1
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.1e-33 147.9 599 31.7
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-32 146.0 277 37.2
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 2.7e-32 144.8 769 28.7
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 4.5e-32 144.1 275 37.8
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.5e-32 144.1 275 37.8
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 2.2e-31 141.7 768 26.7
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 8.5e-31 139.8 266 37.2
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.1e-30 139.4 277 36.1
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 9.4e-30 136.3 311 39.2
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-29 135.2 311 39.2
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.7e-29 134.8 246 39.0
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 6.1e-29 133.7 327 37.6
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 6.1e-29 133.7 469 33.9
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.0e-28 132.9 280 35.0
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 2.3e-28 131.7 649 29.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 8.8e-28 129.8 286 36.0
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.6e-27 128.3 103 58.3
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 7.5e-27 126.7 263 35.4
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.3e-26 125.9 318 35.2
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 3.7e-26 124.4 173 46.8
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 6.3e-26 123.6 226 39.4
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 6.3e-26 123.6 332 34.6
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.1e-25 122.9 284 36.3
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 4.1e-25 120.9 258 37.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.0e-25 120.2 311 33.4
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.0e-23 116.3 590 26.8
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.5e-22 112.5 257 33.1
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 2.5e-22 111.7 514 28.0
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 9.5e-22 109.8 409 32.3
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 6.1e-21 107.1 594 25.4
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 6.1e-21 107.1 362 33.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 2.3e-20 105.1 183 40.4
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 5.2e-20 104.0 186 35.5
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.0e-19 102.1 268 30.2
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 3.4e-19 101.3 272 31.2
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 9.8e-19 99.8 376 27.9
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.3e-18 99.4 417 30.7
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-17 94.7 239 31.8
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 3.1e-17 94.7 579 26.9
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-16 92.4 105 44.8
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.0e-16 92.0 282 29.4
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.7e-16 91.7 173 37.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.9e-16 90.5 156 37.2
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 5.9e-16 90.5 358 29.6
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.9e-15 88.2 157 36.3
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 6.6e-15 87.0 61 60.7
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 5.6e-14 84.0 157 36.9
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.6e-13 82.4 161 34.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 6.1e-13 80.5 212 31.6
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 8.9e-12 76.6 59 62.7
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.5e-11 75.9 162 34.6
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 5.8e-11 73.9 55 65.5
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 6.4e-10 70.5 109 32.1
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 3.2e-09 68.2 110 36.4
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 3.2e-09 68.2 216 30.6
Thecc.07G171300 Theobroma cacao HOM05D003739 ORTHO05D045175 1.3e-07 62.8 153 32.7
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.3e-07 62.0 140 38.6
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 5.6e-06 57.4 84 44.0
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 7.3e-06 57.0 423 22.2
Cfa024558 Carpinus fangiana HOM05D003739 ORTHO05D003996 9.5e-06 56.6 61 45.9


User provided reference genes

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