Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 8.5e-57 223.4 109 100.0
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.1e-48 196.4 108 88.0
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 6.7e-46 187.2 108 82.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.6e-42 176.0 109 78.0
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.0e-42 175.6 109 77.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 4.5e-42 174.5 113 78.8
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.9e-42 174.1 112 79.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.0e-41 173.3 109 77.1
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.3e-41 172.9 112 78.6
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.7e-41 172.6 108 77.8
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.7e-41 172.6 113 77.0
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.8e-41 171.4 109 75.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.8e-41 171.4 111 78.4
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 3.8e-41 171.4 111 75.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.5e-40 169.5 109 76.1
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.9e-40 169.1 111 73.9
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 3.2e-40 168.3 110 76.4
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 3.2e-40 168.3 111 76.6
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 3.2e-40 168.3 102 79.4
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.2e-40 168.3 113 75.2
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.2e-40 167.9 112 74.1
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 4.2e-40 167.9 110 76.4
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 7.2e-40 167.2 110 76.4
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 7.2e-40 167.2 118 70.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.2e-40 167.2 114 74.6
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 9.4e-40 166.8 113 74.3
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.6e-39 166.0 110 75.5
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.1e-39 165.6 111 75.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.7e-39 165.2 111 75.7
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 4.7e-39 164.5 111 76.6
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.7e-39 164.5 101 79.2
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.7e-39 164.5 101 79.2
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 4.7e-39 164.5 101 79.2
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.1e-39 164.1 109 73.4
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.1e-39 164.1 109 73.4
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 6.1e-39 164.1 114 73.7
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 8.0e-39 163.7 112 72.3
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.0e-38 163.3 114 72.8
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-38 162.9 109 73.4
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-38 162.5 109 72.5
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.8e-38 162.5 119 72.3
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.8e-38 162.5 113 73.5
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.8e-38 162.5 85 89.4
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.3e-38 162.2 109 73.4
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.0e-38 161.8 114 73.7
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.5e-37 159.5 109 72.5
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.5e-37 159.5 109 72.5
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.6e-37 158.7 116 69.8
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.6e-37 158.7 143 57.3
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 3.3e-37 158.3 110 72.7
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.3e-37 158.3 114 71.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 3.3e-37 158.3 87 86.2
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 3.3e-37 158.3 92 82.6
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.7e-37 157.5 117 69.2
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 5.7e-37 157.5 110 70.9
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 5.7e-37 157.5 95 80.0
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 7.5e-37 157.1 100 76.0
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 7.5e-37 157.1 90 81.1
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 7.5e-37 157.1 114 71.1
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 9.7e-37 156.8 91 79.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-36 156.4 120 67.5
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.3e-36 156.4 111 73.9
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.8e-36 155.2 111 65.8
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.8e-36 155.2 91 81.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 4.8e-36 154.5 111 71.2
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 4.8e-36 154.5 106 75.5
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 8.2e-36 153.7 91 78.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 8.2e-36 153.7 87 85.1
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.1e-35 153.3 105 72.4
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.1e-35 153.3 115 67.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.1e-35 153.3 113 68.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.4e-35 152.9 112 65.2
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.4e-35 152.9 112 67.0
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-35 152.9 141 60.3
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-35 152.5 112 65.2
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.8e-35 152.5 112 67.0
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.8e-35 152.5 112 65.2
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.4e-35 152.1 105 71.4
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.4e-35 152.1 112 65.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 2.4e-35 152.1 112 64.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.1e-35 151.4 109 71.6
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.1e-35 151.4 90 81.1
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 4.1e-35 151.4 110 71.8
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 7.0e-35 150.6 108 69.4
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.6e-34 149.4 86 84.9
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 2.7e-34 148.7 112 65.2
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.5e-34 148.3 154 53.2
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 4.5e-34 147.9 113 64.6
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 4.5e-34 147.9 112 65.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 4.5e-34 147.9 112 63.4
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 7.7e-34 147.1 98 76.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.7e-34 147.1 110 67.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.0e-33 146.7 112 63.4
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.3e-33 146.4 112 61.6
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.7e-33 146.0 87 81.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.8e-33 144.8 111 67.6
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 3.8e-33 144.8 86 82.6
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 8.5e-33 143.7 92 76.1
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 8.5e-33 143.7 111 64.9
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 8.5e-33 143.7 110 69.1
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.1e-32 143.3 109 66.1
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-32 143.3 110 69.1
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.9e-32 142.5 110 65.5
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.9e-32 142.5 108 63.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.2e-32 141.7 112 62.5
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.2e-32 141.7 86 80.2
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.5e-32 141.0 112 62.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 7.2e-32 140.6 109 62.4
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 7.2e-32 140.6 110 68.2
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 7.2e-32 140.6 113 61.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.6e-31 139.4 112 61.6
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 2.1e-31 139.0 118 63.6
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.6e-31 138.3 115 63.5
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 8.0e-31 137.1 155 52.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.8e-30 136.0 94 69.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 5.2e-30 134.4 113 61.9
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.2e-29 133.3 116 62.9
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.0e-29 132.5 112 60.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.7e-29 131.0 112 59.8
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.5e-29 130.6 78 78.2
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 3.7e-28 128.3 118 60.2
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 8.3e-28 127.1 91 64.8
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.4e-27 126.3 116 60.3
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-27 126.3 84 67.9
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.1e-27 125.2 72 83.3
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.6e-26 122.9 91 63.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.5e-26 121.7 85 74.1
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 5.9e-26 120.9 81 67.9
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.0e-25 120.2 78 69.2
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.7e-25 119.4 78 69.2
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.9e-25 118.6 210 40.0
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-24 116.3 113 58.4
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.9e-24 115.9 82 69.5
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 4.2e-24 114.8 95 66.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.5e-24 114.4 106 59.4
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 5.5e-24 114.4 79 65.8
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 7.2e-24 114.0 90 70.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.0e-23 110.5 85 69.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.0e-21 105.9 86 67.4
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 8.3e-20 100.5 91 59.3
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.4e-19 99.0 77 67.5
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 5.4e-19 97.8 92 53.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 7.0e-19 97.4 67 68.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-17 92.4 74 62.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 3.8e-17 91.7 72 62.5
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 3.8e-17 91.7 72 62.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 5.0e-17 91.3 89 57.3
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 3.3e-16 88.6 50 86.0
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 7.3e-16 87.4 96 46.9
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.3e-16 87.4 53 77.4
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.6e-15 86.3 78 50.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.4e-14 83.2 61 67.2
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.7e-12 76.3 68 50.0
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.9e-12 75.5 46 80.4
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 4.9e-12 74.7 63 58.7
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 6.4e-12 74.3 54 63.0
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.4e-11 71.2 50 74.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 3.5e-10 68.6 63 58.7
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.9e-09 65.1 67 50.7
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 8.6e-09 63.9 72 47.2
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 8.0e-07 57.4 65 43.1
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 8.0e-07 57.4 65 43.1
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-06 57.0 49 63.3


User provided reference genes

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