Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.8e-238 827.8 427 100.0
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 7.5e-141 504.6 376 68.1
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.1e-139 499.2 380 66.8
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 5.3e-139 498.4 404 64.9
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 6.8e-134 481.5 391 62.9
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 4.8e-132 475.3 400 61.2
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 2.0e-130 469.9 377 62.9
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 1.5e-128 463.8 389 61.2
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.3e-128 462.6 383 61.9
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 5.5e-128 461.8 383 61.9
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.5e-128 461.8 414 58.9
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.8e-127 459.5 368 63.6
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.5e-125 453.8 385 60.3
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 9.8e-125 451.1 410 57.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 2.4e-123 446.4 408 56.4
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.4e-123 446.4 384 59.6
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.6e-122 443.7 398 57.0
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 2.9e-121 439.5 389 57.6
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 5.0e-121 438.7 390 57.4
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 5.0e-121 438.7 400 56.5
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 6.6e-121 438.3 421 54.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 8.6e-121 438.0 370 59.7
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 7.3e-120 434.9 384 58.1
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 1.2e-119 434.1 388 57.5
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 3.6e-119 432.6 390 57.9
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.4e-118 430.6 379 57.3
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 6.8e-118 428.3 391 55.8
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.5e-117 427.2 381 57.2
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 3.4e-117 426.0 406 54.7
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 9.8e-117 424.5 391 55.5
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 3.7e-116 422.5 383 59.0
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 6.4e-116 421.8 386 57.3
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 8.3e-116 421.4 399 56.4
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 4.1e-115 419.1 402 56.2
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 3.5e-114 416.0 388 55.9
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 4.6e-114 415.6 390 56.4
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 1.0e-113 414.5 386 56.0
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.7e-113 413.7 396 54.8
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.7e-113 413.7 401 54.6
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.7e-113 413.7 409 54.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.3e-113 413.3 401 55.4
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 3.9e-113 412.5 376 54.8
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 5.6e-112 408.7 382 55.8
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 5.6e-112 408.7 395 55.7
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 1.6e-111 407.1 404 52.0
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.4e-110 404.1 384 55.2
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.3e-110 403.3 371 55.0
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 5.2e-110 402.1 366 57.9
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.0e-109 400.2 390 52.6
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 2.6e-109 399.8 298 64.1
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 8.3e-108 394.8 382 53.9
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 3.2e-107 392.9 384 53.1
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 3.2e-107 392.9 376 55.6
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 5.4e-107 392.1 382 55.5
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 7.0e-107 391.7 405 51.4
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.6e-106 390.6 392 55.4
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 6.0e-106 388.7 385 53.5
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.0e-105 387.9 407 50.6
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 6.6e-105 385.2 408 50.2
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.5e-104 384.0 382 54.7
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.9e-104 383.6 378 53.7
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.6e-103 380.6 346 55.5
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 2.1e-103 380.2 345 57.1
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 8.9e-102 374.8 307 64.2
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.6e-101 373.2 403 48.9
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 5.8e-101 372.1 366 50.8
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 7.5e-101 371.7 393 52.9
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 7.5e-101 371.7 404 50.7
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.9e-100 369.8 384 49.2
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 2.9e-100 369.8 402 50.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 8.3e-100 368.2 400 51.5
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-99 367.9 267 66.7
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.4e-99 367.5 401 50.9
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.9e-99 367.1 387 50.4
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 5.4e-99 365.5 388 51.3
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 7.1e-99 365.2 395 51.1
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.6e-98 364.0 379 52.2
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 6.0e-98 362.1 391 49.6
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.7e-97 360.5 397 48.9
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 3.0e-97 359.8 391 50.4
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 3.0e-97 359.8 392 49.2
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 3.0e-97 359.8 398 49.7
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.9e-96 357.1 377 52.3
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 7.3e-96 355.1 414 47.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 2.0e-93 347.1 407 47.4
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 4.4e-93 345.9 347 53.6
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.2e-90 337.8 380 51.3
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-90 337.8 445 46.1
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 2.7e-90 336.7 375 45.9
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 2.7e-90 336.7 366 51.1
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 6.0e-90 335.5 400 47.5
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.0e-89 334.7 399 46.6
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 9.6e-88 328.2 387 49.6
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 6.2e-87 325.5 283 60.8
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 6.9e-86 322.0 233 63.5
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 2.6e-85 320.1 367 45.8
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 3.4e-85 319.7 252 61.5
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 3.4e-85 319.7 361 50.4
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 2.2e-84 317.0 403 44.7
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.2e-84 317.0 397 43.8
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.8e-84 316.2 385 47.3
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.9e-84 315.8 357 47.6
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 1.9e-83 313.9 366 47.0
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.6e-82 310.8 273 55.7
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.7e-81 307.4 282 56.4
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.9e-80 303.9 294 54.1
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 6.2e-79 298.9 401 42.4
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 8.1e-79 298.5 274 55.1
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 5.8e-77 292.4 306 50.3
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.2e-74 284.6 365 45.5
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 3.5e-74 283.1 365 43.3
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.0e-73 281.6 279 50.9
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.8e-70 270.8 365 43.6
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.0e-68 265.0 365 43.6
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.6e-63 247.7 293 50.9
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.3e-60 238.0 194 56.7
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.9e-59 234.2 235 58.3
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 4.2e-59 233.0 190 57.9
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 9.3e-59 231.9 281 43.8
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 6.1e-58 229.2 190 56.8
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.7e-55 219.9 179 55.3
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.1e-43 181.8 138 60.1
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.8e-41 174.5 214 49.1
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 7.4e-40 169.1 225 45.3
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.2e-39 167.5 224 49.6
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 5.2e-33 146.4 112 62.5
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 2.8e-31 140.6 93 62.4
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 5.3e-30 136.3 101 57.4
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 5.9e-29 132.9 101 57.4
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.8e-25 121.3 99 58.6
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.7e-24 116.3 97 58.8
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.7e-23 114.8 95 58.9
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.8e-23 114.0 101 50.5
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 2.8e-23 114.0 101 60.4
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.8e-22 111.3 101 48.5
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.2e-20 104.4 89 58.4
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 1.1e-19 102.1 153 47.1
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 6.1e-18 96.3 86 43.0
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.6e-16 90.9 77 61.0
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 3.6e-10 70.5 116 42.2
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 1.5e-08 65.1 42 69.0
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.8e-08 62.4 44 63.6
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.4e-06 58.5 126 37.3
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 9.2e-06 55.8 122 39.3


User provided reference genes

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