Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.1e-57 226.9 152 100.0
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.6e-24 116.7 93 63.4
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.0e-23 114.0 91 63.7
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.8e-23 112.1 88 64.8
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.9e-22 109.8 87 66.7
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 2.5e-22 109.4 87 64.4
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.5e-22 109.4 85 67.1
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 4.2e-22 108.6 81 70.4
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 4.2e-22 108.6 83 65.1
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 7.2e-22 107.8 87 67.8
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.6e-21 106.7 88 59.1
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.6e-21 106.7 93 62.4
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 2.8e-21 105.9 68 75.0
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.8e-21 105.9 83 66.3
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.6e-21 105.5 83 65.1
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 6.1e-21 104.8 92 59.8
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 6.1e-21 104.8 81 64.2
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 8.0e-21 104.4 83 65.1
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.0e-20 104.0 88 55.7
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.4e-20 103.6 83 65.1
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.4e-20 103.6 83 65.1
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.8e-20 103.2 93 60.2
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.8e-20 103.2 93 60.2
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-20 103.2 93 60.2
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.8e-20 103.2 81 63.0
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 4.0e-20 102.1 88 55.7
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 8.8e-20 100.9 64 73.4
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 8.8e-20 100.9 64 73.4
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.5e-19 100.1 91 59.3
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.0e-19 99.8 72 70.8
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.0e-19 99.8 83 61.4
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 2.0e-19 99.8 83 61.4
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 4.4e-19 98.6 150 42.7
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 9.8e-19 97.4 79 57.0
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 9.8e-19 97.4 93 54.8
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 9.8e-19 97.4 86 57.0
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 1.3e-18 97.1 73 67.1
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.3e-18 97.1 84 57.1
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.7e-18 96.7 91 54.9
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 2.2e-18 96.3 68 66.2
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 2.8e-18 95.9 93 54.8
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 4.9e-18 95.1 63 74.6
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 6.3e-18 94.7 78 56.4
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 6.3e-18 94.7 86 57.0
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 8.3e-18 94.4 64 70.3
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.4e-17 93.6 91 53.8
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-17 93.6 95 56.8
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.4e-17 93.6 95 56.8
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.4e-17 93.6 94 54.3
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.4e-17 92.8 151 39.7
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.1e-17 92.4 95 53.7
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.1e-17 92.4 71 63.4
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 7.0e-17 91.3 72 59.7
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 7.0e-17 91.3 86 53.5
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 9.2e-17 90.9 82 54.9
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.2e-17 90.9 93 52.7
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 9.2e-17 90.9 93 52.7
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.2e-16 90.5 91 54.9
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.6e-16 90.1 68 63.2
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 2.0e-16 89.7 94 52.1
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.7e-16 89.4 91 54.9
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.5e-16 89.0 96 52.1
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 3.5e-16 89.0 81 55.6
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 3.5e-16 89.0 64 62.5
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 4.5e-16 88.6 62 61.3
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 5.9e-16 88.2 56 67.9
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 5.9e-16 88.2 88 50.0
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 5.9e-16 88.2 76 55.3
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 5.9e-16 88.2 81 53.1
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 7.8e-16 87.8 93 50.5
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 7.8e-16 87.8 64 65.6
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.3e-15 87.0 59 66.1
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.9e-15 85.9 67 59.7
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.9e-15 85.9 58 65.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.9e-15 85.9 62 64.5
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.8e-15 85.5 61 63.9
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 3.8e-15 85.5 59 67.8
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 3.8e-15 85.5 91 48.4
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 5.0e-15 85.1 80 53.8
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.0e-15 85.1 59 62.7
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 6.6e-15 84.7 91 47.3
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 6.6e-15 84.7 85 52.9
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 8.6e-15 84.3 59 64.4
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 8.6e-15 84.3 69 65.2
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 8.6e-15 84.3 67 58.2
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.1e-14 84.0 64 60.9
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.1e-14 84.0 62 61.3
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.9e-14 83.2 73 54.8
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 2.5e-14 82.8 58 69.0
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 3.3e-14 82.4 67 58.2
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 3.3e-14 82.4 77 51.9
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 3.3e-14 82.4 85 50.6
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.3e-14 82.0 57 63.2
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.3e-14 82.0 62 62.9
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 5.6e-14 81.6 74 51.4
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.5e-14 80.9 58 62.1
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.6e-13 80.1 58 60.3
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.1e-13 79.7 68 54.4
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.8e-13 79.3 58 60.3
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 3.6e-13 79.0 55 65.5
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.7e-13 78.6 58 60.3
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 6.1e-13 78.2 56 64.3
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 6.1e-13 78.2 56 64.3
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 6.1e-13 78.2 57 54.4
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 6.1e-13 78.2 56 58.9
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 6.1e-13 78.2 54 63.0
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 8.0e-13 77.8 56 64.3
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.0e-12 77.4 60 63.3
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.4e-12 77.0 54 59.3
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.8e-12 76.6 64 59.4
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.3e-12 76.3 56 64.3
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-12 75.9 56 62.5
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-12 75.9 56 62.5
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 3.0e-12 75.9 56 62.5
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 3.0e-12 75.9 59 57.6
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.0e-12 75.5 80 50.0
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.0e-12 75.5 54 66.7
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 4.0e-12 75.5 58 56.9
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.2e-12 75.1 66 53.0
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 5.2e-12 75.1 82 46.3
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 5.2e-12 75.1 82 46.3
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 5.2e-12 75.1 82 46.3
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 6.8e-12 74.7 65 55.4
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 8.9e-12 74.3 52 65.4
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 8.9e-12 74.3 55 63.6
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.2e-11 73.9 57 61.4
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-11 73.9 60 53.3
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-11 73.9 60 53.3
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.2e-11 73.9 61 60.7
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.5e-11 73.6 59 55.9
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-11 73.2 58 58.6
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.0e-11 73.2 61 55.7
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.6e-11 72.8 67 55.2
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 2.6e-11 72.8 55 61.8
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 3.4e-11 72.4 81 48.1
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 3.4e-11 72.4 81 48.1
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 3.4e-11 72.4 81 48.1
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 3.4e-11 72.4 81 48.1
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.4e-11 72.4 62 53.2
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 3.4e-11 72.4 51 52.9
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 5.7e-11 71.6 59 59.3
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 7.5e-11 71.2 54 61.1
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 9.8e-11 70.9 53 62.3
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 9.8e-11 70.9 54 59.3
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 9.8e-11 70.9 74 47.3
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.3e-10 70.5 61 57.4
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-10 70.5 54 61.1
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.3e-10 70.5 56 60.7
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-10 70.1 86 43.0
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-10 70.1 54 61.1
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.7e-10 70.1 65 52.3
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 2.2e-10 69.7 51 62.7
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.9e-10 69.3 49 65.3
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 2.9e-10 69.3 54 61.1
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.9e-10 69.3 81 44.4
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.9e-10 69.3 81 44.4
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 4.9e-10 68.6 61 54.1
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 4.9e-10 68.6 74 47.3
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 6.4e-10 68.2 54 59.3
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 8.3e-10 67.8 50 62.0
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 8.3e-10 67.8 58 58.6
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-09 67.4 64 50.0
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.4e-09 67.0 48 64.6
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.4e-09 67.0 55 60.0
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 3.2e-09 65.9 50 62.0
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 4.1e-09 65.5 54 59.3
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 4.1e-09 65.5 48 62.5
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.1e-09 65.5 62 53.2
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.1e-09 65.5 62 53.2
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 5.4e-09 65.1 68 45.6
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 5.4e-09 65.1 63 52.4
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 7.0e-09 64.7 57 54.4
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.0e-08 63.2 83 42.2
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 2.7e-08 62.8 63 44.4
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.9e-08 61.6 57 52.6
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.9e-08 61.6 57 52.6
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 1.7e-07 60.1 55 52.7
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.9e-07 58.9 55 45.5
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 3.9e-07 58.9 50 60.0
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 6.6e-07 58.2 45 60.0
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 1.1e-06 57.4 65 41.5
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 1.1e-06 57.4 65 47.7
TPR.G1301 Trifolium pratense HOM05D302815 ORTHO05D004132 1.1e-06 57.4 40 60.0
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-06 56.6 55 50.9
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 1.9e-06 56.6 55 50.9
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 1.9e-06 56.6 55 50.9
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 1.9e-06 56.6 57 52.6
Pp3c20_3210 Physcomitrium patens HOM05D011262 ORTHO05D012767 9.5e-06 54.3 86 38.4
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 9.5e-06 54.3 56 48.2


User provided reference genes

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