Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 0.0e+00 1828.1 935 100.0
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 7.0e-309 1063.9 994 60.9
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 5.9e-300 1034.2 985 60.0
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 5.6e-290 1001.1 986 58.5
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 4.7e-281 971.5 1007 56.7
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 3.2e-277 958.7 976 58.1
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.6e-276 956.4 971 57.9
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.7e-276 955.7 960 57.5
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.9e-274 949.5 963 57.4
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 7.3e-274 947.6 958 58.4
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.1e-272 943.7 953 57.6
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 1.3e-270 936.8 987 55.4
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 8.3e-270 934.1 965 56.6
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.1e-269 933.7 961 56.7
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 9.2e-269 930.6 955 57.1
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.7e-267 926.4 1012 53.6
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.5e-266 923.3 941 58.0
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 3.3e-266 922.2 955 56.0
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 3.3e-266 922.2 908 58.4
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.6e-266 921.4 972 55.0
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.6e-265 918.7 956 56.6
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 5.2e-264 914.8 995 53.6
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.2e-261 905.6 959 54.6
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 4.6e-260 901.7 962 54.1
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.7e-259 899.8 976 54.9
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.3e-259 899.4 966 52.8
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.3e-257 893.6 956 55.5
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 6.2e-257 891.3 970 53.3
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.1e-256 890.6 1001 53.4
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.1e-256 890.6 977 53.0
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 5.3e-256 888.3 1000 52.6
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 9.0e-256 887.5 972 53.9
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 9.0e-256 887.5 981 54.0
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.5e-255 886.7 956 53.6
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.4e-255 885.2 961 55.5
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 9.9e-255 884.0 964 55.3
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 4.2e-253 878.6 958 53.1
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.2e-252 877.1 989 52.3
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.1e-252 876.3 984 53.2
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.5e-250 869.4 973 53.4
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 5.6e-250 868.2 988 52.0
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 9.6e-250 867.5 984 52.9
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.9e-245 853.2 1016 51.2
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 7.1e-245 851.3 963 51.9
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.2e-244 850.5 1009 51.1
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.6e-244 850.1 967 52.6
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 3.9e-243 845.5 998 51.0
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 8.7e-243 844.3 1048 49.2
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.5e-242 842.8 908 56.1
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 4.3e-242 842.0 963 52.3
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 5.6e-242 841.6 998 50.7
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 4.8e-241 838.6 1015 50.3
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.8e-240 836.6 861 53.8
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 9.0e-240 834.3 970 51.9
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 2.0e-239 833.2 1001 49.9
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 6.5e-238 828.2 1102 48.1
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.9e-237 826.6 1014 49.2
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.9e-237 826.6 956 50.9
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 7.1e-237 824.7 1037 49.1
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 9.3e-237 824.3 957 50.9
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.2e-236 823.9 949 50.3
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 2.1e-236 823.2 954 51.7
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 3.0e-235 819.3 964 51.0
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 5.1e-235 818.5 965 51.2
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 8.7e-235 817.8 958 50.4
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 7.4e-234 814.7 967 50.6
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 8.2e-233 811.2 962 50.8
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 3.1e-232 809.3 965 49.9
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.3e-232 808.5 952 51.7
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 9.0e-232 807.7 956 51.6
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 3.4e-231 805.8 1012 48.7
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.0e-230 804.3 966 51.0
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.3e-230 803.9 705 59.6
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.3e-230 803.9 961 50.2
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.1e-229 800.8 980 48.5
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 2.5e-229 799.7 965 49.8
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 3.5e-228 795.8 996 47.2
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.3e-227 793.9 970 49.2
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.6e-225 786.9 1075 46.3
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 4.8e-225 785.4 705 59.1
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.4e-224 783.1 968 47.3
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.2e-223 780.8 957 50.2
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.5e-223 780.4 978 47.4
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.0e-222 777.7 965 49.0
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 5.0e-222 775.4 972 48.8
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.4e-221 773.9 964 48.7
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 7.2e-221 771.5 1026 47.4
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 3.6e-220 769.2 942 48.6
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 3.6e-220 769.2 992 47.5
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 3.9e-219 765.8 956 49.1
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 7.4e-218 761.5 963 48.9
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.3e-217 760.8 680 59.1
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 6.3e-217 758.4 961 48.2
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 5.3e-216 755.4 997 47.3
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.2e-215 754.2 962 48.1
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.3e-214 750.7 723 56.6
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.3e-214 750.7 722 57.2
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.1e-213 747.7 976 47.7
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.4e-213 747.3 937 48.0
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 5.5e-213 745.3 663 59.4
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.7e-212 742.3 986 47.3
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 6.1e-212 741.9 662 59.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 6.1e-212 741.9 696 56.9
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 3.0e-211 739.6 981 47.0
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 9.7e-210 734.6 657 58.9
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.3e-209 734.2 677 58.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 7.0e-200 701.8 944 46.4
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 3.8e-198 696.0 945 44.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 9.4e-197 691.4 929 47.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.5e-194 684.1 666 53.6
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.0e-190 671.4 741 51.7
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 8.8e-187 658.3 718 50.6
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 5.7e-186 655.6 798 48.0
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.6e-175 620.9 990 41.3
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.2e-172 611.3 1037 40.7
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.4e-162 576.2 724 46.8
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 2.0e-146 524.2 619 47.2
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.9e-145 520.4 861 40.5
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.8e-139 501.1 721 44.9
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 4.5e-122 443.4 676 41.7
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 2.5e-104 384.4 545 38.3
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 7.4e-101 372.9 793 32.4
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.1e-99 367.5 474 39.7
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 8.5e-97 359.4 308 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.3e-89 335.5 499 37.5
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.2e-39 169.5 116 66.4
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 8.9e-38 163.3 116 66.4
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 3.2e-35 154.8 404 29.5
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.0e-25 121.7 332 36.1
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 4.3e-24 117.9 177 41.2
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.0e-21 109.0 147 44.9
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 8.1e-15 87.0 80 57.5
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 4.9e-12 77.8 143 41.3
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 6.4e-12 77.4 143 41.3
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.4e-11 76.3 101 44.6
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 6.0e-10 70.9 101 43.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 2.1e-07 62.4 100 41.0
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 1.1e-06 60.1 89 43.8


User provided reference genes

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