Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 1.3e-284 982.2 469 100.0
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 1.2e-205 719.9 465 70.1
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 1.9e-201 706.1 465 69.7
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 3.9e-199 698.4 466 69.1
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 3.3e-198 695.3 463 67.6
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 1.6e-197 693.0 465 69.2
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 3.4e-195 685.3 465 66.9
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 1.3e-191 673.3 461 67.0
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 2.3e-191 672.5 466 66.5
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.0e-187 659.4 466 64.4
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 5.8e-187 657.9 465 64.9
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 2.4e-185 652.5 466 65.9
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 9.2e-185 650.6 467 64.2
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 6.0e-184 647.9 467 64.2
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 1.3e-183 646.7 463 63.7
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.7e-183 646.4 465 63.7
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 2.1e-181 639.4 428 68.0
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 9.0e-180 634.0 472 63.1
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 1.5e-179 633.3 498 60.0
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 4.4e-179 631.7 467 63.8
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 7.6e-179 630.9 464 62.7
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 9.9e-179 630.6 468 64.1
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.3e-178 630.2 465 63.2
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 1.3e-178 630.2 438 64.6
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 2.2e-178 629.4 465 63.7
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 2.9e-178 629.0 464 61.6
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.4e-178 627.9 474 62.0
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 8.4e-178 627.5 472 62.3
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 8.4e-178 627.5 482 61.2
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 1.1e-177 627.1 461 61.8
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.4e-177 626.7 465 61.7
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 1.4e-177 626.7 464 63.4
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 3.2e-177 625.5 465 62.4
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 1.6e-176 623.2 461 61.8
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 5.6e-174 614.8 472 60.4
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 9.6e-174 614.0 461 62.7
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 2.1e-173 612.8 448 62.5
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 2.8e-173 612.5 464 61.2
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 1.2e-171 607.1 464 60.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 2.6e-171 605.9 465 59.8
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 5.8e-171 604.7 466 60.3
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 3.8e-170 602.1 464 58.8
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 4.9e-170 601.7 467 57.8
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 6.4e-170 601.3 498 57.6
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.4e-169 600.1 466 60.1
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 5.4e-169 598.2 453 59.8
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 9.3e-169 597.4 467 58.9
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 1.2e-168 597.0 464 59.7
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 1.2e-168 597.0 467 58.9
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.2e-168 597.0 467 60.2
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 7.9e-168 594.3 467 58.9
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 6.7e-167 591.3 466 58.8
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 6.7e-167 591.3 466 58.8
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 4.3e-166 588.6 473 59.4
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 7.4e-166 587.8 445 60.9
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 6.2e-165 584.7 472 58.1
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 4.0e-164 582.0 488 56.6
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 4.0e-164 582.0 492 56.1
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 2.0e-163 579.7 491 56.2
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 7.4e-158 561.2 347 71.5
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 2.1e-157 559.7 419 61.8
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.4e-156 556.2 440 60.0
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 3.1e-156 555.8 432 60.4
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.2e-155 553.9 349 69.6
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 4.5e-155 552.0 394 64.2
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 1.3e-151 540.4 378 66.4
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 4.3e-150 535.4 412 61.4
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 4.5e-147 525.4 518 52.1
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 5.5e-145 518.5 542 48.3
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 2.5e-142 509.6 398 59.5
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.3e-141 507.3 347 66.0
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 3.1e-140 502.7 464 51.9
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 3.4e-139 499.2 586 44.7
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 1.7e-138 496.9 554 46.9
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 2.2e-138 496.5 463 50.8
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 1.1e-137 494.2 349 63.3
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 9.7e-134 481.1 505 46.9
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.7e-133 480.3 393 56.5
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 1.4e-132 477.2 446 51.8
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 1.8e-132 476.9 380 59.2
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 2.4e-132 476.5 371 61.5
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 2.0e-126 456.8 348 61.5
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 3.1e-124 449.5 380 57.9
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 4.8e-117 425.6 400 51.5
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 8.8e-111 404.8 416 49.8
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 3.1e-108 396.4 472 46.4
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 5.5e-105 385.6 459 44.9
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.7e-98 364.0 302 59.3
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.9e-97 360.5 424 45.5
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 3.1e-95 353.2 199 75.9
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 4.6e-91 339.3 260 59.2
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.9e-89 334.0 261 62.5
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 6.2e-88 328.9 218 67.4
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 8.0e-88 328.6 263 57.0
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 2.6e-86 323.6 461 41.0
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 5.4e-84 315.8 257 57.6
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.9e-81 307.4 301 53.2
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 4.4e-78 296.2 502 37.8
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 5.1e-74 282.7 170 72.9
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 3.3e-73 280.0 226 57.1
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 3.6e-64 250.0 233 55.8
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 2.6e-62 243.8 514 30.0
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 3.4e-62 243.4 160 69.4
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 2.9e-61 240.4 160 68.8
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 2.3e-58 230.7 225 51.1
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 3.9e-58 229.9 343 35.9
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 1.6e-43 181.4 252 40.5
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 3.5e-43 180.3 252 40.5
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 5.1e-42 176.4 234 39.3
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 4.3e-41 173.3 303 34.0
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.6e-40 171.4 179 46.4
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 4.2e-36 156.8 82 80.5
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 3.3e-33 147.1 92 68.5
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 4.1e-31 140.2 155 48.4
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 1.2e-30 138.7 364 28.8
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.2e-27 128.6 115 57.4
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.2e-27 128.6 104 55.8
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 2.1e-27 127.9 87 63.2
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 4.8e-24 116.7 68 72.1
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 6.3e-24 116.3 68 66.2
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 3.1e-23 114.0 113 47.8
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 2.2e-21 107.8 78 62.8
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 2.7e-19 100.9 106 43.4
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 2.6e-17 94.4 225 28.4
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.3e-16 92.0 100 46.0
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 6.3e-16 89.7 151 33.8
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 3.5e-14 84.0 42 85.7
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 5.9e-14 83.2 112 42.0
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 1.1e-12 79.0 87 49.4
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 6.1e-11 73.2 97 43.3
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 8.0e-11 72.8 54 59.3
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 1.3e-08 65.5 113 38.9


User provided reference genes

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