Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2673 Cannabis sativa HOM05D002678 ORTHO05D002920 5.8e-77 290.8 145 100.0
Sabra16G0089400 Salix brachista HOM05D002678 ORTHO05D002920 1.0e-12 77.4 68 57.4
Glyma.10G046800 Glycine max HOM05D002678 ORTHO05D002920 1.7e-12 76.6 92 47.8
Potri.016G081600 Populus trichocarpa HOM05D002678 ORTHO05D002920 3.8e-12 75.5 89 49.4
Dinv35670 Davidia involucrata HOM05D002678 ORTHO05D002920 5.0e-12 75.1 68 51.5
Hma1.2p1_0746F.1_g212310 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 5.0e-12 75.1 120 41.7
Manes.04G028900 Manihot esculenta HOM05D002678 ORTHO05D002920 8.5e-12 74.3 120 41.7
Manes.08G073300 Manihot esculenta HOM05D002678 ORTHO05D002920 8.5e-12 74.3 88 48.9
Nn2g12832 Nelumbo nucifera HOM05D002678 ORTHO05D002920 8.5e-12 74.3 77 55.8
CSS0019295 Camellia sinensis var. sinensis HOM05D002678 ORTHO05D002920 1.1e-11 73.9 69 58.0
Ca_11435_v3 Cicer arietinum L. HOM05D002678 ORTHO05D002920 1.1e-11 73.9 77 51.9
Actinidia37266 Actinidia chinensis HOM05D002678 ORTHO05D002920 1.4e-11 73.6 76 52.6
CANSAT80G0424 Cannabis sativa HOM05D002678 ORTHO05D002920 1.4e-11 73.6 91 45.1
Dinv06291 Davidia involucrata HOM05D002678 ORTHO05D002920 1.4e-11 73.6 68 55.9
Nn2g10547 Nelumbo nucifera HOM05D002678 ORTHO05D002920 2.5e-11 72.8 68 54.4
Potri.006G215000 Populus trichocarpa HOM05D002678 ORTHO05D002920 2.5e-11 72.8 68 55.9
QL01p034494 Quercus lobata HOM05D002678 ORTHO05D002920 2.5e-11 72.8 130 40.8
TAR623G1692 Trochodendron aralioides HOM05D002678 ORTHO05D002920 3.2e-11 72.4 77 53.2
Oeu035168.1 Olea europaea HOM05D002678 ORTHO05D002920 5.5e-11 71.6 95 48.4
Prupe.6G246400 Prunus persica HOM05D002678 ORTHO05D002920 7.2e-11 71.2 123 39.8
Rhsim05G0185100 Rhododendron simsii HOM05D002678 ORTHO05D002920 7.2e-11 71.2 102 42.2
CiPaw.13G102100 Carya illinoinensis HOM05D002678 ORTHO05D002920 9.4e-11 70.9 79 53.2
AUR62020213 Chenopodium quinoa HOM05D002678 ORTHO05D002920 9.4e-11 70.9 68 54.4
ECA248G3075 Erigeron canadensis HOM05D002678 ORTHO05D002920 9.4e-11 70.9 83 45.8
Glyma.13G134700 Glycine max HOM05D002678 ORTHO05D002920 9.4e-11 70.9 68 54.4
Rhsim13G0088900 Rhododendron simsii HOM05D002678 ORTHO05D002920 9.4e-11 70.9 126 42.9
QL07p046064 Quercus lobata HOM05D002678 ORTHO05D002920 1.2e-10 70.5 69 55.1
ATR0759G110 Amborella trichopoda HOM05D002678 ORTHO05D002920 1.6e-10 70.1 120 41.7
EL10Ac7g16278 Beta vulgaris HOM05D002678 ORTHO05D002920 1.6e-10 70.1 125 41.6
Cpa.g.sc3922.1 Carica papaya HOM05D002678 ORTHO05D002920 1.6e-10 70.1 77 51.9
Hma1.2p1_0035F.1_g021820 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 1.6e-10 70.1 120 39.2
TAR636G3383 Trochodendron aralioides HOM05D002678 ORTHO05D002920 1.6e-10 70.1 77 48.1
AUR62001571 Chenopodium quinoa HOM05D002678 ORTHO05D002920 2.1e-10 69.7 122 39.3
SalBow3G2888 Salvia bowleyana HOM05D002678 ORTHO05D002920 2.1e-10 69.7 131 38.9
DCAR_017751 Daucus carota HOM05D002678 ORTHO05D002920 2.7e-10 69.3 120 37.5
Lj1C177T9 Lonicera japonica HOM05D002678 ORTHO05D002920 2.7e-10 69.3 77 49.4
Oeu058517.1 Olea europaea HOM05D002678 ORTHO05D002920 2.7e-10 69.3 71 52.1
Haze_20701 Corylus avellana HOM05D002678 ORTHO05D002920 3.6e-10 68.9 68 54.4
FvH4_6g14750 Fragaria vesca HOM05D002678 ORTHO05D002920 3.6e-10 68.9 70 50.0
FAN02G3512 Fragaria x ananassa HOM05D002678 ORTHO05D002920 3.6e-10 68.9 70 50.0
FAN05G1053 Fragaria x ananassa HOM05D002678 ORTHO05D002920 3.6e-10 68.9 70 50.0
FAN09G4043 Fragaria x ananassa HOM05D002678 ORTHO05D002920 3.6e-10 68.9 70 50.0
FAN14G4174 Fragaria x ananassa HOM05D002678 ORTHO05D002920 3.6e-10 68.9 70 50.0
Psat6g069440 Pisum sativum HOM05D002678 ORTHO05D002920 3.6e-10 68.9 68 51.5
RcHm_v2.0_Chr3g0467961 Rosa chinensis HOM05D002678 ORTHO05D002920 3.6e-10 68.9 70 50.0
Sabra06G0166000 Salix brachista HOM05D002678 ORTHO05D002920 6.1e-10 68.2 68 51.5
SEGI_24546 Sequoiadendron giganteum HOM05D002678 ORTHO05D002920 6.1e-10 68.2 79 45.6
CiPaw.09G186200 Carya illinoinensis HOM05D002678 ORTHO05D002920 7.9e-10 67.8 68 52.9
Gohir.A09G160000 Gossypium hirsutum HOM05D002678 ORTHO05D002920 7.9e-10 67.8 88 47.7
Gorai.006G177000 Gossypium raimondii HOM05D002678 ORTHO05D002920 7.9e-10 67.8 88 47.7
TPR.G10526 Trifolium pratense HOM05D002678 ORTHO05D002920 7.9e-10 67.8 77 48.1
Lsat_1_v5_gn_5_167180 Lactuca sativa HOM05D002678 ORTHO05D002920 1.0e-09 67.4 92 40.2
Duzib106G2004 Durio zibethinus HOM05D002678 ORTHO05D002920 1.4e-09 67.0 96 44.8
Gohir.D09G155600 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.4e-09 67.0 88 47.7
vmacro03134 Vaccinium macrocarpon HOM05D002678 ORTHO05D002920 1.4e-09 67.0 68 52.9
Aqoxy4G03090 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 1.8e-09 66.6 84 44.0
Oeu040266.1 Olea europaea HOM05D002678 ORTHO05D002920 1.8e-09 66.6 70 51.4
Aqoxy2G01947 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 2.3e-09 66.2 104 39.4
COL.COLO4_07093 Corchorus olitorius HOM05D002678 ORTHO05D002920 3.0e-09 65.9 123 39.8
HanXRQChr04g0110311 Helianthus annuus HOM05D002678 ORTHO05D002920 3.0e-09 65.9 77 44.2
MD04G1116500 Malus domestica HOM05D002678 ORTHO05D002920 3.0e-09 65.9 68 54.4
MD12G1132300 Malus domestica HOM05D002678 ORTHO05D002920 3.0e-09 65.9 68 51.5
Cfa017459 Carpinus fangiana HOM05D002678 ORTHO05D002920 3.9e-09 65.5 92 46.7
Lj5g0022817 Lotus japonicus HOM05D002678 ORTHO05D002920 3.9e-09 65.5 68 51.5
Manes.11G136900 Manihot esculenta HOM05D002678 ORTHO05D002920 3.9e-09 65.5 102 42.2
Carub.0006s0146 Capsella rubella HOM05D002678 ORTHO05D002920 5.1e-09 65.1 135 37.0
Lalb_Chr02g0153371 Lupinus albus HOM05D002678 ORTHO05D002920 5.1e-09 65.1 103 41.7
Sc01g0003810 Simmondsia chinensis HOM05D002678 ORTHO05D002920 5.1e-09 65.1 80 43.8
VMungo0720G1849 Vigna mungo HOM05D002678 ORTHO05D002920 5.1e-09 65.1 77 49.4
Duzib170G1033 Durio zibethinus HOM05D002678 ORTHO05D002920 8.8e-09 64.3 120 39.2
Gohir.A04G078100 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.1e-08 63.9 102 44.1
HanXRQChr14g0429171 Helianthus annuus HOM05D002678 ORTHO05D002920 1.1e-08 63.9 69 46.4
Medtr1g067350 Medicago truncatula HOM05D002678 ORTHO05D002920 1.1e-08 63.9 77 48.1
Nitab4.5_0000182g0070 Nicotiana tabacum HOM05D002678 ORTHO05D002920 1.1e-08 63.9 71 47.9
Phvul.007G160800 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 1.1e-08 63.9 77 48.1
Eucgr.L00360 Eucalyptus grandis HOM05D002678 ORTHO05D002920 1.5e-08 63.5 36 77.8
Medtr7g100340 Medicago truncatula HOM05D002678 ORTHO05D002920 1.5e-08 63.5 81 48.1
Ciclev10030290m.g Citrus clementina HOM05D002678 ORTHO05D002920 2.0e-08 63.2 100 45.0
Gohir.A08G000129 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.0e-08 63.2 120 37.5
Gorai.004G003100 Gossypium raimondii HOM05D002678 ORTHO05D002920 2.0e-08 63.2 120 37.5
Cpa.g.sc139.1 Carica papaya HOM05D002678 ORTHO05D002920 2.5e-08 62.8 141 34.8
Duzib093G0125 Durio zibethinus HOM05D002678 ORTHO05D002920 2.5e-08 62.8 68 50.0
Thecc.05G048400 Theobroma cacao HOM05D002678 ORTHO05D002920 2.5e-08 62.8 68 48.5
HPP92_006589 Vanilla planifolia HOM05D002678 ORTHO05D002920 2.5e-08 62.8 69 47.8
Gohir.D04G117300 Gossypium hirsutum HOM05D002678 ORTHO05D002920 3.3e-08 62.4 102 43.1
Gohir.D08G009900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 3.3e-08 62.4 120 37.5
Gorai.009G422300 Gossypium raimondii HOM05D002678 ORTHO05D002920 3.3e-08 62.4 102 43.1
Migut.L01639 Erythranthe guttata HOM05D002678 ORTHO05D002920 4.3e-08 62.0 123 35.0
Glyma.19G175800 Glycine max HOM05D002678 ORTHO05D002920 4.3e-08 62.0 77 49.4
Gorai.001G106900 Gossypium raimondii HOM05D002678 ORTHO05D002920 4.3e-08 62.0 124 37.1
DCAR_014949 Daucus carota HOM05D002678 ORTHO05D002920 5.7e-08 61.6 87 46.0
Nitab4.5_0000270g0250 Nicotiana tabacum HOM05D002678 ORTHO05D002920 5.7e-08 61.6 70 47.1
MBI14_g21098_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 7.4e-08 61.2 128 35.2
Solyc10g084510.1 Solanum lycopersicum HOM05D002678 ORTHO05D002920 7.4e-08 61.2 70 54.3
PGSC0003DMG400011054 Solanum tuberosum HOM05D002678 ORTHO05D002920 7.4e-08 61.2 68 57.4
Thecc.09G330900 Theobroma cacao HOM05D002678 ORTHO05D002920 7.4e-08 61.2 67 55.2
DCAR_015584 Daucus carota HOM05D002678 ORTHO05D002920 9.7e-08 60.8 113 38.1
DCAR_018868 Daucus carota HOM05D002678 ORTHO05D002920 9.7e-08 60.8 145 34.5
Glyma.03G175100 Glycine max HOM05D002678 ORTHO05D002920 9.7e-08 60.8 103 42.7
Gohir.D07G099200 Gossypium hirsutum HOM05D002678 ORTHO05D002920 9.7e-08 60.8 124 36.3
arahy.Tifrunner.gnm1.ann1.2B715G Arachis hypogaea HOM05D002678 ORTHO05D002920 1.3e-07 60.5 36 75.0
arahy.Tifrunner.gnm1.ann1.FZ8WY7 Arachis hypogaea HOM05D002678 ORTHO05D002920 1.3e-07 60.5 36 75.0
Duzib150G0336 Durio zibethinus HOM05D002678 ORTHO05D002920 1.3e-07 60.5 123 38.2
Sopen10g033940 Solanum pennellii HOM05D002678 ORTHO05D002920 1.3e-07 60.5 70 54.3
TWI75G0718 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 1.3e-07 60.5 68 51.5
Duzib128G1720 Durio zibethinus HOM05D002678 ORTHO05D002920 1.7e-07 60.1 102 38.2
TPR.G35579 Trifolium pratense HOM05D002678 ORTHO05D002920 1.7e-07 60.1 79 46.8
TWI79G0420 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 1.7e-07 60.1 78 48.7
Gorai.002G253000 Gossypium raimondii HOM05D002678 ORTHO05D002920 2.2e-07 59.7 123 34.1
MBI05_g32634_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 2.2e-07 59.7 68 47.1
PSO339G4561 Papaver somniferum HOM05D002678 ORTHO05D002920 2.2e-07 59.7 75 38.7
PSO384G0436 Papaver somniferum HOM05D002678 ORTHO05D002920 2.2e-07 59.7 75 38.7
PGR004G2814 Punica granatum HOM05D002678 ORTHO05D002920 2.2e-07 59.7 71 43.7
Sopen06g031980 Solanum pennellii HOM05D002678 ORTHO05D002920 2.2e-07 59.7 120 34.2
AL6G11940 Arabidopsis lyrata HOM05D002678 ORTHO05D002920 2.8e-07 59.3 73 52.1
Gohir.A01G218900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.8e-07 59.3 123 35.0
Lj1g0018959 Lotus japonicus HOM05D002678 ORTHO05D002920 2.8e-07 59.3 69 46.4
C03p01120 Brassica napus HOM05D002678 ORTHO05D002920 3.7e-07 58.9 131 37.4
BolC3t12671H Brassica oleracea HOM05D002678 ORTHO05D002920 3.7e-07 58.9 131 37.4
Phvul.001G172100 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 3.7e-07 58.9 67 50.7
AT5G02640 Arabidopsis thaliana HOM05D002678 ORTHO05D002920 4.8e-07 58.5 75 50.7
CARHR210710 Cardamine hirsuta HOM05D002678 ORTHO05D002920 4.8e-07 58.5 75 50.7
Cc06_g03230 Coffea canephora HOM05D002678 ORTHO05D002920 4.8e-07 58.5 127 33.9
VMungo1383G3255 Vigna mungo HOM05D002678 ORTHO05D002920 4.8e-07 58.5 67 47.8
Ciclev10012982m.g Citrus clementina HOM05D002678 ORTHO05D002920 6.3e-07 58.2 68 51.5
Migut.N02647 Erythranthe guttata HOM05D002678 ORTHO05D002920 6.3e-07 58.2 136 35.3
COL.COLO4_18420 Corchorus olitorius HOM05D002678 ORTHO05D002920 8.2e-07 57.8 71 45.1
CsaV3_6G022030 Cucumis sativus L. HOM05D002678 ORTHO05D002920 8.2e-07 57.8 130 33.1
Lsat_1_v5_gn_6_26380 Lactuca sativa HOM05D002678 ORTHO05D002920 1.1e-06 57.4 100 39.0
Sed0026303 Sechium edule HOM05D002678 ORTHO05D002920 1.1e-06 57.4 75 40.0
Duzib168G1913 Durio zibethinus HOM05D002678 ORTHO05D002920 1.4e-06 57.0 67 49.3
Gohir.D01G207900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.4e-06 57.0 123 33.3
ClCG10G020770 Citrullus lanatus HOM05D002678 ORTHO05D002920 1.8e-06 56.6 82 42.7
Thhalv10014890m.g Eutrema salsugineum HOM05D002678 ORTHO05D002920 1.8e-06 56.6 98 41.8
PGR004G2176 Punica granatum HOM05D002678 ORTHO05D002920 2.4e-06 56.2 71 42.3
A03p00870 Brassica napus HOM05D002678 ORTHO05D002920 3.1e-06 55.8 112 37.5
BcaC06g32005 Brassica carinata HOM05D002678 ORTHO05D002920 4.1e-06 55.5 76 43.4
MELO3C025706.2 Cucumis melo HOM05D002678 ORTHO05D002920 4.1e-06 55.5 125 31.2
PGSC0003DMG400030480 Solanum tuberosum HOM05D002678 ORTHO05D002920 4.1e-06 55.5 84 38.1
Zm00001eb265860 Zea mays HOM05D002678 ORTHO05D002920 4.1e-06 55.5 37 73.0
SalBow3G1187 Salvia bowleyana HOM05D002678 ORTHO05D002920 5.3e-06 55.1 107 36.4
BcaB01g06197 Brassica carinata HOM05D002678 ORTHO05D002920 6.9e-06 54.7 81 42.0
MELO3C009291.2 Cucumis melo HOM05D002678 ORTHO05D002920 6.9e-06 54.7 49 59.2
Sed0001325 Sechium edule HOM05D002678 ORTHO05D002920 6.9e-06 54.7 126 36.5
HPP92_012460 Vanilla planifolia HOM05D002678 ORTHO05D002920 6.9e-06 54.7 79 43.0
SGA_v2.0_scaffold94G28644 Striga asiatica HOM05D002678 ORTHO05D002920 9.1e-06 54.3 70 47.1


User provided reference genes

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