Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 1.7e-148 529.3 256 100.0
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 4.0e-97 358.6 245 70.6
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.2e-95 352.8 240 70.4
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 3.7e-95 352.1 254 67.7
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 4.5e-93 345.1 253 65.6
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.0e-92 344.0 219 74.4
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 1.0e-92 344.0 218 74.3
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.3e-92 343.6 259 65.6
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 1.7e-92 343.2 216 74.1
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 2.3e-92 342.8 253 67.2
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.5e-91 340.1 232 68.5
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 4.2e-91 338.6 241 67.6
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 7.2e-91 337.8 232 68.5
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 4.7e-90 335.1 200 76.0
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 8.0e-90 334.3 237 66.7
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 8.0e-90 334.3 258 63.2
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.4e-89 333.6 206 72.8
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.4e-89 333.6 206 72.8
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 1.8e-89 333.2 215 73.0
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.3e-89 332.8 258 64.3
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 8.9e-89 330.9 201 74.1
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.2e-88 330.5 244 66.0
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.5e-88 330.1 199 75.4
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 1.5e-88 330.1 242 66.9
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 3.4e-88 328.9 244 65.2
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 5.7e-88 328.2 201 73.6
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 7.5e-88 327.8 240 65.8
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 7.5e-88 327.8 240 65.0
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 9.8e-88 327.4 251 63.3
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 2.2e-87 326.2 233 65.2
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 2.2e-87 326.2 242 63.6
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.8e-87 325.9 234 67.5
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 2.8e-87 325.9 199 74.9
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 4.9e-87 325.1 249 63.9
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.1e-86 323.9 239 64.0
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 1.4e-86 323.6 205 72.2
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 1.8e-86 323.2 244 63.1
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 2.4e-86 322.8 257 62.6
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 2.4e-86 322.8 222 67.1
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.1e-86 322.4 208 69.2
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 4.1e-86 322.0 199 72.9
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 5.4e-86 321.6 202 71.8
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 7.0e-86 321.2 247 62.3
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 1.2e-85 320.5 212 68.4
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.2e-85 320.5 199 73.4
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 1.2e-85 320.5 242 64.9
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 2.0e-85 319.7 198 74.2
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 2.7e-85 319.3 206 69.4
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 5.9e-85 318.2 206 68.9
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 5.9e-85 318.2 241 62.7
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 3.8e-84 315.5 248 62.5
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 6.6e-84 314.7 246 62.2
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 1.1e-83 313.9 209 70.8
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 1.5e-83 313.5 249 59.8
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.5e-83 313.5 197 72.1
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 1.9e-83 313.2 237 61.2
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 5.6e-83 311.6 251 62.2
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 5.6e-83 311.6 201 71.6
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 7.3e-83 311.2 212 67.0
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 7.3e-83 311.2 212 67.5
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 4.7e-82 308.5 212 67.0
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 6.1e-82 308.1 265 57.4
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.8e-81 306.6 213 65.3
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 7.5e-80 301.2 209 68.4
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 9.8e-80 300.8 197 69.5
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 2.2e-79 299.7 196 68.4
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 3.7e-79 298.9 197 67.5
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 4.9e-79 298.5 228 64.9
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 6.4e-79 298.1 234 62.4
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 6.4e-79 298.1 197 69.0
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.4e-78 297.0 240 58.8
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 2.4e-78 296.2 235 60.0
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 9.2e-78 294.3 237 58.6
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 2.7e-77 292.7 199 67.8
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 1.7e-76 290.0 202 69.3
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 4.3e-75 285.4 195 65.6
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.2e-74 283.9 167 75.4
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 1.2e-74 283.9 194 66.5
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.6e-74 283.5 167 75.4
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 3.4e-72 275.8 222 59.5
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 3.4e-72 275.8 177 68.4
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 3.7e-71 272.3 248 56.9
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 4.1e-70 268.9 209 63.6
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.5e-69 265.8 209 62.2
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 3.3e-67 259.2 180 70.0
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 8.1e-66 254.6 168 67.3
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 7.5e-64 248.1 192 58.3
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 9.9e-64 247.7 190 58.9
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 2.1e-61 240.0 197 54.3
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 6.0e-61 238.4 179 65.4
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 1.0e-60 237.7 133 80.5
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 3.0e-60 236.1 194 54.6
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 3.9e-60 235.7 226 50.4
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 5.1e-60 235.3 161 68.9
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.6e-58 229.2 166 64.5
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 3.8e-55 219.2 187 56.7
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 1.2e-48 197.6 127 71.7
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 5.8e-48 195.3 130 68.5
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 1.9e-46 190.3 197 48.7
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 4.3e-43 179.1 194 47.9
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 9.6e-43 177.9 199 47.7
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 9.0e-41 171.4 104 71.2
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.4e-38 164.1 182 42.3
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 6.7e-36 155.2 145 51.7
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 9.0e-33 144.8 80 81.2
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 9.3e-30 134.8 93 63.4
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 2.9e-23 113.2 66 74.2
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.4e-22 110.9 87 56.3
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 2.8e-18 96.7 54 79.6
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.4e-17 94.4 60 73.3
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.2e-16 91.3 54 74.1
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 1.5e-16 90.9 54 75.9
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 5.0e-15 85.9 63 60.3
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 5.1e-12 75.9 97 43.3
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.5e-11 74.3 92 45.7
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.5e-11 74.3 61 57.4
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 5.7e-11 72.4 91 45.1
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 5.7e-11 72.4 91 45.1
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 5.7e-11 72.4 91 45.1
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.7e-10 70.9 66 47.0
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 1.7e-07 60.8 34 73.5
Prupe.2G114400 Prunus persica HOM05D002689 ORTHO05D003129 5.5e-06 55.8 139 26.6
Solyc08g013840.3 Solanum lycopersicum HOM05D002689 ORTHO05D003129 7.2e-06 55.5 136 27.9
Sopen08g004690 Solanum pennellii HOM05D002689 ORTHO05D003129 9.4e-06 55.1 136 27.9


User provided reference genes

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