Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 1.5e-187 659.4 348 100.0
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 5.7e-131 471.5 352 73.0
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 4.8e-130 468.4 351 70.9
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 8.2e-130 467.6 353 71.7
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 5.5e-126 454.9 353 69.7
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.2e-125 453.8 353 69.7
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.6e-123 446.0 353 70.3
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 3.4e-123 445.7 353 68.0
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.4e-123 445.7 356 68.5
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.3e-122 443.7 354 67.5
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.1e-121 440.7 353 68.8
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.8e-121 439.9 355 68.5
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 2.4e-121 439.5 356 68.5
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 5.4e-121 438.3 358 69.3
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 2.0e-120 436.4 358 69.0
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.7e-119 433.3 359 65.5
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 3.8e-119 432.2 351 68.7
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 6.5e-119 431.4 360 65.0
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.2e-118 429.1 360 67.5
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 4.2e-118 428.7 369 64.0
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 5.5e-118 428.3 349 69.9
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.5e-118 428.3 349 69.9
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 9.4e-118 427.6 361 66.8
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.7e-117 426.0 328 67.4
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 4.7e-117 425.2 360 66.7
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.0e-116 424.1 354 66.9
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.3e-116 422.9 359 63.5
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 8.8e-116 421.0 349 69.6
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.2e-115 420.6 359 65.2
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.6e-115 419.5 351 67.5
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.4e-115 419.1 349 69.1
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 5.7e-115 418.3 360 66.4
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 9.8e-115 417.5 360 65.3
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.7e-114 416.8 364 62.9
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.7e-114 416.8 349 68.8
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 2.2e-114 416.4 334 66.2
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.8e-114 416.0 357 62.7
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 3.7e-114 415.6 353 66.6
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 4.9e-114 415.2 345 64.6
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 8.3e-114 414.5 364 62.1
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.1e-113 414.1 360 64.2
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 1.4e-113 413.7 359 64.6
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 9.2e-113 411.0 353 65.4
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 3.5e-112 409.1 362 62.2
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 4.5e-112 408.7 358 61.5
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 5.9e-112 408.3 353 63.7
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.3e-111 407.1 349 63.3
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.7e-111 406.8 360 62.2
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 1.7e-111 406.8 358 62.6
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 2.9e-111 406.0 336 66.1
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.1e-110 404.1 359 61.8
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.5e-110 403.7 337 64.4
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.5e-110 403.7 353 63.5
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 4.3e-110 402.1 348 62.6
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.3e-110 402.1 348 63.2
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 4.3e-110 402.1 362 62.2
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 5.6e-110 401.7 356 61.8
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 5.6e-110 401.7 353 62.6
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 5.6e-110 401.7 353 62.6
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 7.3e-110 401.4 357 65.3
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 1.2e-109 400.6 360 60.6
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.6e-109 400.2 366 61.7
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 2.1e-109 399.8 340 64.1
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 2.1e-109 399.8 359 61.6
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 2.8e-109 399.4 348 62.4
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 6.1e-109 398.3 335 65.4
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 6.1e-109 398.3 353 62.6
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.8e-108 396.7 356 62.1
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.8e-108 396.7 373 61.4
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 3.0e-108 396.0 332 63.6
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 4.0e-108 395.6 348 61.8
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 5.2e-108 395.2 333 63.7
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 8.9e-108 394.4 360 59.7
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 3.4e-107 392.5 335 65.1
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.4e-107 392.5 332 63.0
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 3.4e-107 392.5 350 62.9
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.7e-106 390.2 340 63.2
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 1.7e-106 390.2 305 68.9
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.9e-106 389.4 353 62.9
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.4e-105 387.1 361 61.5
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 5.4e-105 385.2 356 59.8
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 5.4e-105 385.2 363 61.7
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 2.7e-104 382.9 359 61.3
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 5.9e-104 381.7 305 67.5
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 7.8e-104 381.3 358 60.3
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 1.3e-103 380.6 359 62.7
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 6.6e-103 378.3 340 61.5
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 3.3e-102 375.9 408 53.9
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 3.3e-102 375.9 349 59.0
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 5.6e-102 375.2 340 60.9
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.6e-101 373.6 386 56.0
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 2.1e-101 373.2 370 58.6
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.0e-100 370.9 346 62.1
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.8e-100 370.2 356 58.1
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 6.8e-100 368.2 357 58.5
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.5e-99 367.1 357 58.8
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 7.5e-99 364.8 376 57.2
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 4.9e-98 362.1 420 51.9
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.4e-97 359.8 362 57.2
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 3.2e-97 359.4 349 58.7
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 3.5e-96 355.9 334 58.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 9.5e-94 347.8 296 63.5
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 3.6e-93 345.9 375 55.5
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 1.8e-92 343.6 266 68.8
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 1.8e-84 317.0 364 49.7
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 4.0e-84 315.8 387 50.4
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 5.4e-81 305.4 269 62.8
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.2e-74 283.5 340 51.8
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.1e-70 271.2 396 43.4
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.2e-57 226.5 342 43.3
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 4.2e-57 226.1 189 61.4
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 4.3e-54 216.1 265 52.1
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 2.1e-48 197.2 324 38.9
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 3.1e-44 183.3 136 68.4
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 4.1e-44 183.0 321 35.8
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.7e-40 170.2 345 33.9
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 7.7e-35 152.1 102 70.6
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 3.9e-31 139.8 362 30.7
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.3e-29 132.5 105 61.9
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.1e-28 131.7 105 61.0
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.0e-22 110.9 129 48.8
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 7.4e-22 109.0 166 44.6
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.4e-20 104.0 121 47.9
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 3.1e-12 77.0 357 25.5
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 1.0e-10 72.0 119 48.7
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 3.8e-10 70.1 50 64.0
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 1.4e-07 61.6 225 24.4
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.8e-07 61.2 138 26.1


User provided reference genes

Program Settings