Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 2329.3 1195 100.0
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1880.5 1202 79.8
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1865.1 1209 78.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1862.8 1203 78.6
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1844.3 1209 78.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1843.9 1201 77.7
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1835.1 1211 78.0
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1834.3 1211 77.1
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1820.8 1209 76.8
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1820.4 1207 76.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1817.7 1198 76.7
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1817.4 1210 76.7
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1815.4 1198 76.5
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1808.5 1206 76.9
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1805.0 1198 76.0
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1803.9 1198 75.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1802.3 1198 76.0
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1802.3 1209 76.3
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1796.2 1203 75.7
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1794.2 1203 75.8
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1793.1 1211 76.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1791.2 1206 75.0
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1788.9 1208 75.0
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1776.1 1209 74.9
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1773.1 1206 74.9
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1764.2 1200 74.7
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1758.0 1206 73.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1742.2 1207 74.6
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1733.0 1207 72.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1729.5 1182 74.5
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1724.9 1210 72.6
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1721.4 1207 73.2
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1718.7 1207 72.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1718.7 1212 72.1
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1717.2 1203 73.4
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1716.8 1171 75.1
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1716.0 1204 72.5
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1714.5 1175 75.2
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1710.3 1227 71.6
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1709.1 1197 73.3
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1703.3 1197 72.8
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1702.2 1205 71.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1695.6 1196 72.7
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1693.7 1208 72.0
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1692.2 1207 72.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1684.8 1200 71.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1679.5 1206 72.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1678.7 1210 71.0
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1677.5 1211 70.2
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1676.8 1208 70.4
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1675.6 1147 73.5
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1674.1 1208 71.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1673.7 1206 71.1
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1649.0 1208 69.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1647.9 1203 69.5
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1646.7 1208 69.6
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1644.8 1205 70.1
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1643.6 1209 69.6
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1642.9 1207 69.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1642.1 1168 71.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1641.7 1201 70.1
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1641.3 1209 69.6
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1639.0 1208 69.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1631.3 1210 68.9
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1629.4 1207 68.0
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1626.7 1210 68.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1625.9 1206 68.6
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1622.8 1204 68.6
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1622.1 1205 69.7
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1618.6 1206 68.6
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1610.1 1193 69.7
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1602.0 1207 67.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1184 69.5
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1117 72.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1587.8 1199 67.7
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1584.7 1193 68.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1581.6 1184 68.4
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1577.4 1211 69.4
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1574.3 1205 67.6
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1574.3 1200 67.4
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1573.1 1204 65.8
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1573.1 1198 67.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1571.6 1198 68.7
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1569.3 1200 67.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1569.3 1215 66.5
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1567.0 1191 68.3
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1562.7 1203 66.7
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1552.3 1204 66.9
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1546.9 1257 65.3
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1468.4 1136 65.8
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1459.9 1210 63.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1443.7 1138 65.8
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1441.8 1292 61.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1436.8 1026 71.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1433.7 988 74.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1430.6 1209 63.6
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1380.5 1203 60.6
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1369.4 1176 61.1
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1343.6 1207 57.8
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1312.0 1208 57.5
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1271.5 1050 64.0
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1196.8 891 69.6
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1176.4 837 73.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1160.6 965 65.2
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1153.7 797 73.4
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1087.4 1148 53.7
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.8e-278 962.6 1235 43.7
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 4.6e-273 945.3 1236 43.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 5.3e-269 931.8 1238 44.7
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-261 907.1 630 72.5
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 3.2e-250 869.4 1186 44.9
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.2e-244 850.9 1200 40.8
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.0e-243 847.8 1153 44.5
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 4.7e-241 839.0 1175 44.2
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.4e-240 837.4 1153 44.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 5.5e-234 815.5 1047 46.7
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.3e-224 783.5 794 53.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 3.6e-217 759.6 1222 37.8
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.5e-210 736.9 600 65.0
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.0e-200 703.0 638 57.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-196 691.4 571 62.7
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.9e-181 641.0 540 61.5
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.7e-172 610.5 417 73.6
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.1e-170 605.1 470 68.9
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.5e-149 533.1 489 56.4
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 6.3e-129 466.5 321 73.8
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.8e-115 421.8 297 73.1
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 3.6e-84 317.8 1379 24.7
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.2e-81 308.5 210 73.8
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.6e-76 292.4 267 55.4
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 6.2e-76 290.4 211 71.1
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.6e-66 258.5 187 72.2
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 8.4e-57 226.9 216 58.3
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.6e-52 212.6 460 32.6
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.7e-52 211.5 436 34.6
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.9e-41 175.3 109 81.7
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.8e-36 158.7 1150 21.9
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.3e-21 108.6 96 60.4
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 9.1e-19 100.5 74 67.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.9e-16 92.8 349 26.9
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 7.2e-16 90.9 82 59.8
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.0e-15 87.4 73 58.9
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.8e-14 84.0 72 63.9
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 2.0e-13 82.8 172 39.5
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 2.0e-13 82.8 343 26.2
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.7e-12 79.7 63 68.3
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.7e-12 78.6 78 57.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 6.3e-12 77.8 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 6.3e-12 77.8 50 80.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 3.8e-09 68.6 62 58.1
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-08 66.6 78 50.0
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.1e-07 62.8 71 47.9
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 6.1e-07 61.2 69 49.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 4.0e-06 58.5 48 58.3


User provided reference genes

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