Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 2.5e-47 191.8 99 100.0
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 1.2e-30 136.3 97 74.2
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 8.0e-30 133.7 97 73.2
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 5.7e-28 127.5 100 71.0
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 7.5e-28 127.1 96 79.2
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 8.3e-27 123.6 98 74.5
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 1.1e-26 123.2 96 74.0
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 1.4e-26 122.9 95 69.5
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 1.4e-26 122.9 96 74.0
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 2.4e-26 122.1 98 69.4
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 4.1e-26 121.3 95 70.5
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 5.4e-26 120.9 97 66.0
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 3.5e-25 118.2 101 68.3
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 4.6e-25 117.9 99 68.7
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 7.8e-25 117.1 101 69.3
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 1.7e-24 115.9 98 68.4
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.3e-24 115.5 95 68.4
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 3.0e-24 115.2 100 70.0
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 5.0e-24 114.4 96 65.6
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 8.6e-24 113.6 96 67.7
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 1.1e-23 113.2 97 72.2
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 7.3e-23 110.5 94 62.8
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 9.5e-23 110.2 96 64.6
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 9.5e-23 110.2 97 68.0
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 9.5e-23 110.2 96 67.7
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 9.5e-23 110.2 98 67.3
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 2.8e-22 108.6 95 62.1
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 2.8e-22 108.6 98 67.3
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 4.7e-22 107.8 98 62.2
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 4.7e-22 107.8 97 68.0
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 4.7e-22 107.8 97 68.0
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 6.2e-22 107.5 96 67.7
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 1.1e-21 106.7 100 64.0
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 1.4e-21 106.3 102 63.7
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 2.3e-21 105.5 95 65.3
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 3.1e-21 105.1 100 64.0
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 8.9e-21 103.6 98 64.3
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 1.2e-20 103.2 96 66.7
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 1.2e-20 103.2 96 64.6
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 1.5e-20 102.8 101 60.4
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 2.0e-20 102.4 97 62.9
Sed0014350 Sechium edule HOM05D005811 ORTHO05D007070 2.0e-20 102.4 97 61.9
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 3.4e-20 101.7 97 66.0
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 4.4e-20 101.3 99 64.6
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 4.4e-20 101.3 101 63.4
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 4.4e-20 101.3 98 66.3
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 1.7e-19 99.4 98 63.3
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 2.2e-19 99.0 97 63.9
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 2.2e-19 99.0 99 59.6
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.7e-19 98.2 99 57.6
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 3.7e-19 98.2 87 62.1
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 1.1e-18 96.7 100 53.0
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.1e-18 96.7 99 57.6
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 1.4e-18 96.3 111 56.8
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 1.9e-18 95.9 105 60.0
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 4.1e-18 94.7 96 60.4
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 5.4e-18 94.4 97 60.8
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 5.4e-18 94.4 97 60.8
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 5.4e-18 94.4 96 60.4
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 7.0e-18 94.0 96 59.4
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 7.0e-18 94.0 106 51.9
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.7e-17 92.0 91 58.2
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 4.6e-17 91.3 84 63.1
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.3e-16 89.7 84 60.7
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 3.0e-16 88.6 100 57.0
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 3.9e-16 88.2 116 53.4
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 5.0e-16 87.8 84 63.1
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 8.6e-16 87.0 62 74.2
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 1.1e-15 86.7 98 50.0
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 1.5e-15 86.3 102 49.0
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 2.5e-15 85.5 100 54.0
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 4.3e-15 84.7 102 48.0
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 3.6e-14 81.6 68 64.7
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 3.6e-14 81.6 68 64.7
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 4.7e-14 81.3 103 52.4
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 4.7e-14 81.3 98 53.1
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.1e-13 80.1 68 63.2
vmacro02985 Vaccinium macrocarpon HOM05D005811 ORTHO05D007070 1.1e-13 80.1 100 52.0
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 1.4e-13 79.7 101 49.5
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 1.8e-13 79.3 99 49.5
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 1.8e-13 79.3 99 49.5
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 1.8e-13 79.3 99 49.5
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 1.8e-13 79.3 99 49.5
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 1.8e-13 79.3 99 49.5
FAN25G1329 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.8e-13 79.3 68 63.2
Nn3g20363 Nelumbo nucifera HOM05D005811 ORTHO05D007070 1.8e-13 79.3 77 61.0
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 1.8e-13 79.3 72 61.1
Nn1g05379 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.3e-13 79.0 61 68.9
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 4.0e-13 78.2 97 46.4
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 5.2e-13 77.8 104 51.0
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 6.8e-13 77.4 68 61.8
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 8.9e-13 77.0 99 52.5
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 1.2e-12 76.6 99 48.5
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.5e-12 76.3 99 48.5
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 2.6e-12 75.5 99 48.5
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 3.4e-12 75.1 96 51.0
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 3.4e-12 75.1 96 51.0
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 4.4e-12 74.7 60 68.3
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 4.4e-12 74.7 95 49.5
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 5.8e-12 74.3 95 50.5
Rhsim13G0071700 Rhododendron simsii HOM05D005811 ORTHO05D007070 7.5e-12 73.9 100 49.0
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 9.9e-12 73.6 97 50.5
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 1.3e-11 73.2 99 53.5
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 1.3e-11 73.2 99 53.5
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 1.7e-11 72.8 111 48.6
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 2.2e-11 72.4 97 51.5
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 2.2e-11 72.4 97 51.5
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 2.9e-11 72.0 98 51.0
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 2.9e-11 72.0 99 52.5
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 2.9e-11 72.0 99 52.5
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 2.9e-11 72.0 93 53.8
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 3.7e-11 71.6 97 51.5
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 1.1e-10 70.1 98 49.0
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 1.4e-10 69.7 99 51.5
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 1.4e-10 69.7 99 51.5
Peaxi162Scf01058g00001 Petunia axillaris HOM05D005811 ORTHO05D007070 1.4e-10 69.7 108 47.2
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 3.2e-10 68.6 104 47.1
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 4.1e-10 68.2 107 47.7
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 5.4e-10 67.8 119 43.7
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 1.2e-09 66.6 97 45.4
CDE02G0229 Ceratophyllum demersum HOM05D005811 ORTHO05D007070 1.6e-09 66.2 81 53.1
Migut.D02091 Erythranthe guttata HOM05D005811 ORTHO05D007070 1.6e-09 66.2 109 49.5
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 1.0e-08 63.5 98 44.9
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 1.3e-08 63.2 110 44.5
GSVIVG01024785001 Vitis vinifera HOM05D005811 ORTHO05D007070 3.0e-08 62.0 95 44.2
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 3.9e-08 61.6 100 44.0
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 3.9e-08 61.6 65 55.4
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 1.1e-07 60.1 104 48.1
unitig_899.g15251 Utricularia gibba HOM05D005811 ORTHO05D007070 1.9e-07 59.3 63 55.6
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 4.3e-07 58.2 80 46.2
Os07g0243150 Oryza sativa ssp. japonica HOM05D019609 ORTHO05D007070 4.7e-06 54.7 83 41.0


User provided reference genes

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