Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 4.4e-147 525.4 273 100.0
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 3.5e-67 260.0 279 51.3
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.9e-61 239.6 277 49.1
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.0e-58 231.9 277 47.3
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 8.6e-58 228.8 249 49.8
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 4.3e-57 226.5 242 50.4
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 4.7e-56 223.0 238 50.8
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 4.7e-56 223.0 238 50.0
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 8.0e-56 222.2 271 46.1
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.0e-54 217.6 277 45.8
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.3e-50 204.9 217 50.2
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.9e-49 201.1 277 43.7
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 7.3e-49 199.1 228 47.8
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.6e-48 198.0 272 44.1
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 2.1e-48 197.6 275 42.5
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 2.8e-48 197.2 226 47.8
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.3e-47 194.1 270 42.6
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 8.9e-47 192.2 273 39.2
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 8.9e-47 192.2 201 50.2
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 1.4e-44 184.9 271 40.6
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 2.4e-44 184.1 206 49.5
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 2.7e-43 180.6 212 48.6
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 4.6e-43 179.9 168 56.5
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 1.7e-42 177.9 198 50.5
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 3.9e-42 176.8 286 39.2
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 3.3e-41 173.7 210 45.7
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 5.6e-41 172.9 202 52.0
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 7.3e-41 172.6 215 41.9
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.6e-40 171.4 211 46.0
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.3e-39 167.5 211 45.0
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 8.9e-39 165.6 208 45.7
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 2.6e-38 164.1 227 39.2
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 3.4e-38 163.7 217 44.2
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.3e-37 161.8 228 39.5
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.3e-37 161.8 208 46.6
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.7e-37 161.4 257 40.5
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 2.2e-37 161.0 217 47.5
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.9e-36 157.9 238 38.7
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 4.1e-36 156.8 192 41.7
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 7.1e-36 156.0 197 47.2
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.2e-35 155.2 238 38.2
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.6e-35 153.3 201 44.8
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 1.7e-34 151.4 264 38.3
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 1.7e-34 151.4 207 44.0
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.0e-34 150.6 188 45.7
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 3.9e-34 150.2 235 39.6
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 5.1e-34 149.8 227 37.4
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.1e-33 148.7 232 37.5
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.9e-33 147.9 207 43.5
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 7.3e-33 146.0 227 37.0
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 6.2e-32 142.9 192 38.5
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 6.2e-32 142.9 192 38.5
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 8.1e-32 142.5 208 38.0
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-31 142.1 259 33.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.4e-31 141.7 226 35.8
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.4e-31 141.7 226 35.8
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 1.4e-31 141.7 242 36.0
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 2.4e-31 141.0 204 35.3
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 5.2e-31 139.8 186 38.7
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 6.9e-31 139.4 186 37.6
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 6.9e-31 139.4 234 40.2
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.5e-30 138.3 243 32.5
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.5e-30 138.3 233 36.1
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.5e-30 138.3 205 41.5
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 2.6e-30 137.5 157 47.8
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.4e-30 137.1 190 35.3
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.4e-30 136.7 192 37.0
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.7e-29 134.8 283 32.5
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 6.4e-29 132.9 255 31.8
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.1e-28 132.1 234 35.0
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.4e-28 131.0 234 35.0
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 3.2e-28 130.6 262 34.4
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 3.2e-28 130.6 244 34.8
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.6e-27 128.3 232 34.5
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 3.5e-27 127.1 263 33.5
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.6e-27 126.7 234 33.8
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 6.0e-27 126.3 192 34.4
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.3e-26 125.2 192 37.0
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.3e-26 124.4 211 34.1
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 5.1e-26 123.2 185 38.9
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 6.6e-26 122.9 173 38.2
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 8.7e-26 122.5 150 40.7
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.1e-25 122.1 171 42.1
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.5e-25 121.7 203 32.5
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.5e-25 120.9 197 34.5
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.3e-25 120.6 197 36.0
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 3.3e-25 120.6 158 39.2
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 4.3e-25 120.2 201 34.3
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 7.3e-25 119.4 203 35.5
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 9.6e-25 119.0 189 33.9
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 9.6e-25 119.0 195 33.3
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.3e-24 118.6 207 34.8
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.3e-24 118.6 115 55.7
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.3e-24 118.6 203 36.9
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.6e-24 118.2 195 36.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.1e-24 117.9 206 36.9
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.8e-24 116.7 226 33.6
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 8.1e-24 115.9 157 40.1
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.8e-23 114.8 240 27.1
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.8e-23 114.8 176 35.8
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 3.1e-23 114.0 202 33.2
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.0e-23 113.6 145 39.3
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 5.3e-23 113.2 199 34.7
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.3e-23 113.2 137 42.3
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 5.3e-23 113.2 153 37.9
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.2e-22 112.1 217 31.3
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.5e-22 111.7 205 35.6
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.0e-22 111.3 164 37.2
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 5.8e-22 109.8 145 38.6
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.3e-21 108.6 143 39.9
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.8e-21 107.1 146 34.2
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.4e-20 105.1 151 35.1
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.4e-20 105.1 156 37.8
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 9.3e-20 102.4 207 33.8
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 7.9e-19 99.4 173 37.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 7.9e-19 99.4 147 38.1
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 1.8e-18 98.2 233 29.6
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 8.7e-18 95.9 233 26.6
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.1e-17 95.5 122 38.5
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 1.5e-17 95.1 157 38.2
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 1.5e-17 95.1 146 34.9
BolC4t23855H Brassica oleracea HOM05D004255 ORTHO05D004815 3.3e-17 94.0 175 39.4
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 3.3e-17 94.0 187 31.0
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 4.3e-17 93.6 277 25.6
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 9.6e-17 92.4 96 41.7
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 2.8e-16 90.9 153 30.7
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 4.8e-16 90.1 166 34.9
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.4e-15 87.8 162 34.6
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.1e-15 87.4 162 34.0
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 1.5e-14 85.1 57 68.4
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.0e-14 84.7 99 43.4
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 2.0e-14 84.7 133 37.6
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.6e-14 84.3 161 34.8
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.6e-14 84.3 162 34.6
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 1.7e-13 81.6 208 30.8
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.7e-13 81.6 158 33.5
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 3.8e-13 80.5 171 31.0
C04p23520 Brassica napus HOM05D004255 ORTHO05D004815 1.4e-12 78.6 158 38.0
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 1.9e-12 78.2 162 32.7
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 2.4e-12 77.8 167 30.5
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 2.4e-12 77.8 162 32.7
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 4.2e-12 77.0 164 34.1
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 5.5e-12 76.6 158 32.9
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 9.3e-12 75.9 106 38.7
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.6e-11 75.1 274 25.5
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 3.5e-11 73.9 90 34.4
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 4.6e-11 73.6 158 31.6
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 7.9e-11 72.8 86 37.2
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 7.9e-11 72.8 158 32.3
BcaC02g10932 Brassica carinata HOM05D004255 ORTHO05D004815 1.8e-10 71.6 88 50.0
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-09 68.9 106 34.9
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 5.6e-09 66.6 99 37.4
Os07g0671200 Oryza sativa ssp. japonica HOM05D032177 ORTHO05D004815 1.3e-08 65.5 169 25.4
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 3.7e-08 63.9 238 25.2
Zm00001eb111150 Zea mays HOM05D032177 ORTHO05D004815 3.7e-08 63.9 165 27.9
Zm00001eb111120 Zea mays HOM05D032177 ORTHO05D004815 4.8e-08 63.5 165 28.5
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 1.8e-07 61.6 56 48.2
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 2.4e-07 61.2 225 23.1
CANSAT56G1376 Cannabis sativa HOM05D007956 ORTHO05D010152 6.9e-07 59.7 216 24.1
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.5e-06 58.5 97 36.1
EL10Ac9g22566 Beta vulgaris HOM05D004255 ORTHO05D004815 2.0e-06 58.2 53 49.1
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 3.4e-06 57.4 86 43.0
SEGI_04056 Sequoiadendron giganteum HOM05D004255 ORTHO05D004815 3.4e-06 57.4 130 30.0
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 4.5e-06 57.0 182 23.6
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.5e-06 57.0 155 23.9
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 4.5e-06 57.0 143 27.3
Aqoxy7G03720 Aquilegia oxysepala HOM05D006819 ORTHO05D008763 5.8e-06 56.6 192 25.0


User provided reference genes

Program Settings