Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 7.1e-118 427.6 262 100.0
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 4.1e-73 278.9 260 63.8
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 2.2e-71 273.1 264 58.0
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 5.0e-71 271.9 265 58.9
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 1.2e-69 267.3 262 61.1
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.6e-69 266.9 264 56.8
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.1e-69 266.5 257 59.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 4.7e-69 265.4 264 58.3
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 4.7e-69 265.4 266 53.4
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 8.0e-69 264.6 262 58.0
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.8e-68 263.5 266 56.4
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.0e-68 262.7 264 54.9
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 4.0e-68 262.3 264 56.8
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 4.0e-68 262.3 262 56.9
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 4.0e-68 262.3 264 57.2
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 5.2e-68 261.9 264 53.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 8.8e-68 261.2 265 57.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 8.8e-68 261.2 254 60.2
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.2e-67 260.8 264 55.3
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 4.4e-67 258.8 266 52.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.7e-67 258.5 257 61.9
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 7.5e-67 258.1 170 68.8
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 7.5e-67 258.1 265 57.0
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 9.7e-67 257.7 262 57.6
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.7e-66 256.9 267 59.2
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.2e-66 256.5 257 56.0
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.8e-66 255.4 257 54.9
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.8e-66 255.4 268 49.6
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 6.3e-66 255.0 262 57.3
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.3e-66 254.6 264 56.1
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.1e-65 254.2 265 56.6
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.1e-65 254.2 255 54.9
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.4e-65 253.8 263 54.4
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-65 253.8 262 56.5
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.8e-65 253.4 264 49.6
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.4e-65 253.1 264 57.2
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 3.1e-65 252.7 266 51.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 4.1e-65 252.3 263 56.3
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.3e-65 251.9 249 57.8
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 5.3e-65 251.9 254 62.2
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 7.0e-65 251.5 266 54.9
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.1e-65 251.1 265 53.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.2e-64 250.8 257 51.4
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.0e-64 250.0 263 53.2
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.0e-64 250.0 266 51.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 2.0e-64 250.0 252 66.7
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 2.7e-64 249.6 249 49.4
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.7e-64 249.6 253 62.5
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.5e-64 249.2 166 69.9
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 3.5e-64 249.2 275 48.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.0e-63 247.7 253 64.4
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.3e-63 247.3 263 53.6
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.7e-63 246.9 256 53.9
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.7e-63 246.9 261 55.9
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 3.8e-63 245.7 254 54.7
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 5.0e-63 245.4 254 48.0
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 5.0e-63 245.4 264 48.1
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 6.5e-63 245.0 255 53.7
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 4.2e-62 242.3 254 48.0
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 5.5e-62 241.9 256 48.4
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 5.5e-62 241.9 253 52.6
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.5e-62 241.9 254 47.2
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 7.2e-62 241.5 254 48.4
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 7.2e-62 241.5 300 50.7
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 9.4e-62 241.1 254 48.4
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 9.4e-62 241.1 259 53.7
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 9.4e-62 241.1 255 54.9
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.2e-61 240.7 260 55.4
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.6e-61 240.4 254 47.6
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.7e-61 239.6 254 48.0
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.7e-61 239.6 261 51.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.7e-61 239.6 252 52.0
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.7e-61 239.6 252 50.4
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.6e-61 239.2 254 51.6
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.0e-60 237.7 252 50.8
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.0e-60 237.7 252 52.0
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.4e-60 237.3 260 46.9
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-60 237.3 255 54.1
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-60 236.9 254 50.0
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.3e-60 236.5 259 49.8
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 3.0e-60 236.1 253 50.2
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.2e-60 235.3 265 52.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 8.8e-60 234.6 254 53.5
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 8.8e-60 234.6 254 52.4
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 8.8e-60 234.6 254 54.7
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.5e-59 233.8 169 65.1
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.5e-59 233.8 252 54.8
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.0e-59 233.4 256 47.3
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.4e-59 232.6 262 48.1
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.7e-59 231.9 255 50.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 5.7e-59 231.9 253 51.4
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-59 231.9 253 51.0
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-59 231.9 253 51.4
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-59 231.9 253 51.4
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.3e-58 230.7 254 53.1
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.3e-58 230.7 254 53.5
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.7e-58 230.3 252 46.8
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.7e-58 230.3 265 48.3
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.2e-58 229.9 265 53.2
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.8e-58 229.6 256 46.1
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.7e-58 229.2 256 50.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.7e-58 229.2 263 47.5
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.7e-58 229.2 249 53.4
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.3e-58 228.4 254 51.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 6.3e-58 228.4 255 47.8
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 8.3e-58 228.0 254 48.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 8.3e-58 228.0 254 48.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-57 227.6 249 52.6
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.4e-57 227.3 255 50.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.4e-57 226.5 255 49.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 5.4e-57 225.3 250 54.4
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 9.1e-57 224.6 167 60.5
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.6e-56 223.8 280 46.4
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.5e-56 222.2 250 52.8
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 7.7e-56 221.5 253 51.0
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.7e-55 220.3 257 51.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 2.9e-55 219.5 254 51.6
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.9e-55 219.5 274 46.7
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.9e-55 219.5 251 49.8
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 6.6e-55 218.4 255 52.9
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.5e-54 217.2 230 57.8
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-54 217.2 279 46.2
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-54 217.2 259 51.7
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.9e-54 216.9 251 49.8
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.5e-54 216.5 254 45.3
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 4.2e-54 215.7 256 48.4
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 5.5e-54 215.3 142 68.3
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.5e-54 214.5 252 48.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 3.6e-53 212.6 251 51.0
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.1e-53 211.8 256 55.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 4.0e-52 209.1 140 67.9
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.0e-52 209.1 255 44.7
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.0e-51 206.8 143 67.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 4.4e-51 205.7 230 49.1
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.9e-50 202.2 139 70.5
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.9e-50 202.2 306 38.6
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.0e-47 194.5 130 69.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.3e-47 193.4 135 66.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.6e-47 191.4 128 68.0
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.6e-45 187.2 165 58.2
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.7e-45 185.7 146 61.0
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.6e-43 179.9 183 49.7
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 3.2e-41 172.9 145 53.1
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.1e-41 172.6 148 54.7
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.0e-41 171.8 129 62.0
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 6.0e-40 168.7 127 63.0
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.1e-28 129.8 95 69.5
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.0e-27 127.1 87 64.4
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.4e-27 125.9 259 36.3
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 7.6e-27 125.2 99 62.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 7.6e-27 125.2 142 50.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.1e-22 111.3 151 39.7
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 7.3e-22 108.6 112 48.2
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.7e-18 97.4 165 37.6
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 7.1e-17 92.0 95 47.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.2e-16 91.3 102 41.2
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.1e-16 90.5 123 35.8
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 3.9e-15 86.3 124 36.3
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.1e-14 84.7 119 36.1
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.9e-14 84.0 80 51.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 5.8e-11 72.4 69 46.4
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.9e-09 67.4 135 43.7
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 1.9e-06 57.4 56 46.4
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 9.6e-06 55.1 63 44.4


User provided reference genes

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