Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.9e-245 852.0 423 100.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 2.3e-158 562.8 425 66.6
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 3.1e-155 552.4 426 64.3
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 8.4e-153 544.3 427 65.3
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 3.2e-152 542.3 425 64.2
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 2.7e-151 539.3 427 62.8
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 5.1e-150 535.0 412 63.6
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.3e-149 531.9 426 62.4
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.2e-146 523.9 411 63.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 3.8e-145 518.8 422 61.6
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.5e-144 515.0 412 62.1
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 9.3e-144 514.2 412 62.1
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 1.6e-143 513.5 418 62.7
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 2.7e-143 512.7 412 61.9
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.6e-143 511.9 411 62.0
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 3.0e-142 509.2 425 63.1
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.2e-138 497.3 411 60.8
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.3e-137 493.8 429 59.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.7e-137 493.4 376 66.5
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.0e-137 491.9 411 60.6
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.5e-136 489.6 411 60.3
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 4.2e-136 488.8 411 60.1
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 7.2e-136 488.0 403 61.8
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 7.2e-136 488.0 425 57.6
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.2e-135 487.3 426 58.0
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.6e-135 486.9 411 60.3
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 6.1e-135 485.0 396 61.4
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 4.8e-132 475.3 422 55.7
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.2e-130 470.7 398 59.3
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.5e-130 470.3 407 58.5
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 2.0e-130 469.9 414 55.6
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 3.4e-130 469.2 391 60.6
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.7e-129 466.8 412 56.1
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.8e-129 465.7 424 55.7
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 8.5e-129 464.5 425 55.3
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 2.5e-128 463.0 428 57.2
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.1e-127 459.9 427 53.2
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.1e-127 459.9 424 55.2
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.8e-126 456.8 423 54.4
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 3.0e-126 456.1 427 52.7
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 3.0e-126 456.1 409 53.8
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 8.8e-126 454.5 428 55.6
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 8.8e-126 454.5 392 56.4
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.5e-125 453.8 391 57.5
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 2.6e-125 453.0 429 56.9
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 4.4e-125 452.2 425 54.8
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.7e-125 451.8 392 56.9
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 4.8e-124 448.7 390 57.2
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 4.8e-124 448.7 395 55.7
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.4e-123 447.2 392 56.1
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 3.1e-123 446.0 399 56.9
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 7.0e-123 444.9 428 55.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 2.6e-122 443.0 393 56.7
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 5.9e-122 441.8 426 52.8
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 7.7e-122 441.4 392 55.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 2.9e-121 439.5 424 53.3
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 6.5e-121 438.3 370 59.7
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 6.5e-121 438.3 425 53.4
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.1e-120 437.6 417 53.7
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 7.2e-120 434.9 422 53.6
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.1e-119 433.3 376 57.7
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.7e-119 432.2 398 55.0
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 8.8e-118 427.9 412 54.9
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 5.7e-117 425.2 413 54.0
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.7e-116 423.7 385 55.1
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 4.8e-116 422.2 411 52.8
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 6.3e-116 421.8 404 53.5
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 8.2e-116 421.4 413 53.5
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.4e-115 420.6 404 54.2
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 1.2e-114 417.5 404 53.7
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 4.5e-114 415.6 402 54.2
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.7e-113 413.7 391 54.5
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 2.2e-113 413.3 425 51.5
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 2.2e-113 413.3 406 53.0
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 2.9e-113 412.9 407 53.1
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 1.1e-112 411.0 405 53.6
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.9e-112 410.2 425 52.0
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 3.2e-112 409.5 425 52.0
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 6.1e-111 405.2 377 55.2
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.8e-110 403.7 383 54.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 6.7e-110 401.7 384 54.7
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 8.8e-110 401.4 383 54.8
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 2.0e-109 400.2 416 48.3
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 7.5e-109 398.3 419 48.7
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 9.7e-109 397.9 380 54.7
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 6.3e-108 395.2 364 57.7
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 4.5e-106 389.0 389 52.2
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.9e-105 386.3 375 53.9
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 6.5e-105 385.2 389 52.2
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 4.2e-104 382.5 389 51.4
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 3.6e-103 379.4 389 51.2
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 3.6e-103 379.4 400 51.8
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 2.6e-101 373.2 436 47.7
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 1.8e-99 367.1 391 51.4
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 7.0e-99 365.2 383 49.3
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.2e-98 364.4 426 47.9
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 1.5e-96 357.5 287 64.5
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 5.5e-96 355.5 398 48.7
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.7e-92 344.0 396 47.5
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 1.8e-91 340.5 308 56.8
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 2.7e-90 336.7 391 47.1
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-87 327.4 324 54.0
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.3e-81 307.0 252 61.9
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.6e-77 293.5 281 52.7
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 4.4e-77 292.7 373 46.4
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 9.8e-77 291.6 299 51.2
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 5.4e-75 285.8 336 48.2
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-74 284.6 294 53.1
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.7e-73 280.8 273 57.5
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 3.4e-69 266.5 228 57.0
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 8.3e-68 261.9 208 62.0
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 1.2e-66 258.1 196 62.8
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 3.0e-65 253.4 174 69.0
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 2.5e-64 250.4 331 42.0
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 3.8e-60 236.5 404 35.1
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.4e-59 234.6 417 34.3
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 9.2e-59 231.9 185 61.1
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 8.1e-55 218.8 178 60.1
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.8e-52 209.9 169 60.9
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 4.6e-50 203.0 209 55.0
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 8.7e-49 198.7 252 45.6
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-43 181.4 137 67.2
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.5e-42 176.8 321 34.9
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 6.7e-41 172.6 176 55.7
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.9e-38 162.5 278 36.3
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.5e-37 161.4 407 28.0
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 5.5e-35 152.9 177 50.8
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.2e-34 151.8 177 46.9
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.6e-34 149.8 419 27.9
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.0e-33 148.7 107 62.6
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.2e-31 139.0 111 66.7
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-29 134.8 115 62.6
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.2e-27 126.7 107 63.6
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 1.6e-23 114.8 90 58.9
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.0e-20 103.2 115 46.1
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.2e-19 99.4 115 46.1
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 3.2e-11 73.9 89 42.7
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.1e-10 69.7 84 46.4
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 6.3e-07 59.7 53 50.9
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 3.1e-06 57.4 57 45.6
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.3e-06 56.6 68 47.1


User provided reference genes

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