Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 5.2e-246 854.0 447 100.0
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 1.8e-116 423.7 485 55.9
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.1e-115 421.0 438 61.0
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-115 420.2 471 56.1
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 5.6e-115 418.7 479 56.8
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.4e-113 413.3 447 57.7
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.4e-110 404.1 454 55.9
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 4.2e-110 402.5 449 57.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.1e-109 400.2 469 54.4
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.0e-109 398.7 452 56.0
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.3e-108 397.5 434 56.2
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.0e-108 396.4 453 53.4
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 6.7e-108 395.2 469 53.9
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.9e-107 393.7 427 56.2
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 4.3e-107 392.5 471 53.9
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 2.8e-106 389.8 460 56.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 3.7e-106 389.4 410 58.0
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 9.0e-105 384.8 469 53.3
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.2e-104 384.4 448 54.9
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.0e-104 383.6 444 56.1
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.6e-104 383.3 446 55.4
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 8.4e-103 378.3 462 53.2
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 4.2e-102 375.9 453 54.1
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.2e-101 374.4 455 53.0
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.2e-101 374.4 442 53.4
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 2.7e-101 373.2 463 53.8
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 4.6e-101 372.5 492 50.0
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 7.9e-101 371.7 449 53.7
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.3e-100 370.9 397 59.7
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.8e-100 370.5 455 53.2
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 8.7e-100 368.2 450 54.0
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.9e-99 367.1 448 54.9
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.9e-99 367.1 405 56.8
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 2.5e-99 366.7 498 50.6
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 7.4e-99 365.2 448 52.0
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 9.7e-99 364.8 415 55.7
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 3.7e-98 362.8 456 51.8
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 4.8e-98 362.5 463 50.1
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.4e-97 360.9 442 53.8
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-96 357.8 425 54.1
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.2e-96 357.8 448 51.6
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 5.0e-95 352.4 452 50.2
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 8.5e-95 351.7 445 51.0
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.2e-94 349.7 450 52.7
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.6e-93 347.4 457 50.8
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 4.6e-93 345.9 464 49.6
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.8e-92 344.0 473 48.0
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.8e-92 344.0 453 52.5
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.5e-91 340.9 320 61.2
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 7.4e-91 338.6 448 50.7
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.1e-89 334.7 465 49.5
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.4e-89 334.3 468 48.7
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.8e-89 334.0 454 49.3
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.1e-89 331.6 469 50.3
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 9.1e-89 331.6 440 51.1
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 5.9e-88 328.9 460 47.8
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.0e-87 328.2 453 51.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.3e-87 327.8 414 52.4
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 5.5e-86 322.4 446 49.3
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 5.5e-86 322.4 468 47.6
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 2.7e-85 320.1 498 45.2
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 5.1e-84 315.8 440 48.6
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-83 314.3 358 55.0
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 3.3e-83 313.2 417 49.4
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 4.4e-83 312.8 489 45.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 9.7e-83 311.6 447 46.3
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 4.1e-81 306.2 455 46.4
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 9.1e-81 305.1 452 45.4
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.5e-80 304.3 455 45.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.0e-80 303.9 471 45.2
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 3.5e-80 303.1 440 46.1
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 4.5e-80 302.8 463 45.1
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 5.9e-80 302.4 449 47.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 7.7e-80 302.0 449 46.8
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 7.7e-80 302.0 449 46.8
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.2e-79 300.4 468 44.2
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.6e-77 294.3 459 44.7
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.1e-77 293.9 458 46.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 5.2e-76 289.3 455 44.8
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 5.7e-75 285.8 472 43.9
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.8e-73 280.8 469 45.4
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 4.1e-73 279.6 460 44.6
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 2.6e-72 276.9 441 44.2
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.2e-71 273.9 450 42.9
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 3.8e-71 273.1 486 42.6
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 8.5e-71 271.9 421 46.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 5.5e-70 269.2 489 41.9
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.3e-68 263.8 437 45.5
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 5.2e-68 262.7 455 44.8
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 6.8e-68 262.3 455 44.8
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.5e-67 258.8 462 42.2
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.7e-66 257.7 288 52.4
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 2.8e-66 256.9 447 43.2
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.8e-66 256.9 477 43.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 3.7e-66 256.5 451 43.5
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 4.8e-66 256.1 465 41.9
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 6.3e-66 255.8 348 50.0
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 5.3e-65 252.7 302 54.0
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.6e-64 251.1 429 43.8
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 7.7e-64 248.8 348 48.6
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.5e-62 244.6 472 40.9
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.1e-61 239.2 461 41.4
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 5.2e-60 236.1 369 46.3
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.2e-58 230.7 348 46.3
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 2.8e-58 230.3 212 61.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.7e-58 229.9 194 64.9
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.3e-55 220.7 349 44.7
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 6.6e-55 219.2 286 50.7
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 3.3e-54 216.9 446 38.3
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.6e-53 214.5 443 38.8
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.6e-53 214.5 443 38.8
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 4.7e-53 213.0 419 37.7
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 6.1e-53 212.6 357 45.4
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.1e-53 212.6 383 42.0
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.3e-52 210.7 260 54.2
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-51 208.4 303 48.2
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 4.1e-49 199.9 443 37.0
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 6.1e-45 186.0 162 61.1
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.2e-44 183.0 306 42.5
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 6.8e-44 182.6 459 35.9
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.2e-43 181.8 308 40.3
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.4e-41 174.9 223 53.4
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.0e-40 171.0 264 44.7
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.1e-36 157.1 232 47.4
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.2e-32 145.2 144 56.9
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 2.5e-30 137.5 472 30.7
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 6.2e-29 132.9 249 41.0
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.2e-26 124.4 134 56.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.7e-26 123.6 215 42.8
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 4.9e-26 123.2 164 50.6
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 8.1e-21 105.9 168 47.0
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.4e-20 105.1 170 47.6
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 3.6e-13 80.5 85 56.5
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 9.9e-11 72.4 122 41.0
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.7e-08 64.3 113 41.6
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.3e-07 62.0 69 49.3
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.3e-07 61.2 92 40.2
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 4.3e-06 57.0 90 40.0
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 7.3e-06 56.2 92 37.0
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 9.6e-06 55.8 92 34.8


User provided reference genes

Program Settings