Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 3502.6 1834 100.0
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2684.4 1804 76.6
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2677.1 1803 75.9
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2646.3 1804 75.3
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2636.3 1857 73.0
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2620.5 1802 74.3
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2614.0 1805 74.2
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2596.6 1808 73.1
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2578.1 1806 72.5
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2573.9 1804 72.3
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2569.7 1805 73.1
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2564.6 1803 72.9
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2561.6 1806 72.8
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2550.0 1808 72.0
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2533.1 1806 71.6
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2526.9 1808 71.5
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2523.0 1811 71.6
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2520.7 1830 71.2
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2518.4 1804 71.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2515.3 1806 71.0
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2508.8 1806 71.9
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2503.8 1830 70.8
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2497.6 1830 70.6
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2495.3 1805 71.4
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2488.8 1808 70.8
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2486.4 1808 70.1
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2483.4 1803 70.8
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2474.9 1808 70.0
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2472.2 1809 70.5
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2471.4 1802 70.2
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2467.6 1808 68.8
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2461.4 1809 70.1
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2460.6 1822 69.5
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2460.3 1805 70.1
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2456.0 1807 69.6
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2450.2 1810 69.3
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2445.2 1808 69.6
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2439.5 1805 68.9
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2430.2 1806 67.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2414.8 1798 68.8
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2414.4 1807 69.0
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2406.3 1805 66.7
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2403.2 1810 67.3
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2402.1 1835 68.3
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2399.8 1804 67.8
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2395.2 1807 66.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2393.6 1809 66.2
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2382.8 1807 66.7
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2377.4 1807 66.6
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2377.1 2355 55.8
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2372.0 1817 66.6
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2365.1 1821 66.2
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2358.6 1782 68.6
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2355.1 1807 65.7
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2352.4 1818 65.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2351.6 1809 66.3
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2348.9 1807 65.7
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2347.0 1807 67.0
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2345.9 1822 65.5
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2345.5 1808 65.9
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2344.3 1814 65.9
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2338.1 1819 66.2
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2336.2 1827 64.6
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2335.5 1813 66.7
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2333.9 1811 65.4
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2314.3 1823 65.5
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2302.7 1814 66.0
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2296.2 1818 65.7
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2282.7 1830 64.0
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2281.9 1821 64.2
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2248.0 1851 62.5
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2244.5 1814 64.2
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2242.6 1979 60.1
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2186.0 1888 61.0
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2121.7 1795 61.1
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2074.3 1480 71.8
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2057.0 1806 58.4
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 2029.2 1502 69.2
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 2007.3 1396 73.6
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1884.4 1382 69.2
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1858.2 1400 68.2
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1838.9 1306 72.4
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1835.8 1330 70.2
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1784.2 1349 69.4
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1659.8 1341 65.4
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1658.7 1863 47.9
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1599.3 1237 67.5
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1594.3 1838 49.0
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1590.1 1875 46.7
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1545.8 1882 46.0
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1515.0 1132 67.3
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1471.1 1106 67.8
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1427.9 1641 47.6
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1404.4 1347 57.8
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1291.2 1109 59.2
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1184.1 1053 58.6
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1134.4 906 62.6
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 5.8e-283 978.8 1557 36.6
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.8e-275 952.2 886 56.2
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 4.1e-252 876.3 1731 34.3
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 4.2e-249 866.3 637 69.5
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 3.1e-236 823.5 1739 32.8
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.8e-231 807.7 793 54.1
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 3.7e-213 746.9 599 65.6
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 5.0e-210 736.5 512 72.1
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 9.2e-180 636.0 439 72.2
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 9.2e-180 636.0 664 51.5
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 2.7e-179 634.4 446 71.3
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.0e-167 594.0 2016 27.1
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 5.6e-161 573.5 451 67.0
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 3.6e-160 570.9 442 69.2
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.6e-152 544.3 347 78.7
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.9e-149 533.9 509 55.4
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 3.0e-138 498.0 315 77.8
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 8.2e-128 463.4 362 67.1
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 3.4e-118 431.4 822 36.6
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 8.5e-109 400.2 1631 23.3
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 2.0e-97 362.5 278 65.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 8.3e-96 357.1 279 64.5
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 4.1e-95 354.8 281 64.8
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.7e-77 296.2 161 87.6
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.3e-74 285.8 276 51.1
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 5.4e-71 274.6 203 69.5
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.7e-62 245.7 344 39.5
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 5.2e-58 231.5 339 44.2
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 3.0e-53 215.7 163 65.0
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 9.6e-52 210.7 331 42.9
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.8e-51 209.1 204 52.5
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 1.4e-50 206.8 206 53.9
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.5e-49 203.4 147 67.3
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.2e-48 199.5 148 70.9
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 6.0e-46 191.4 140 71.4
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.9e-44 186.4 130 71.5
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.8e-42 179.9 218 42.7
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 4.0e-42 178.7 177 58.8
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 6.9e-42 177.9 234 50.0
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 2.0e-41 176.4 280 42.1
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 1.4e-34 153.7 181 45.3
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 3.1e-34 152.5 178 54.5
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 9.9e-33 147.5 143 52.4
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.2e-32 146.4 153 48.4
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 5.1e-29 135.2 114 63.2
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 1.4e-26 127.1 178 41.0
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 3.1e-26 125.9 90 68.9
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 2.9e-24 119.4 75 76.0
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 9.3e-23 114.4 78 74.4
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 8.7e-21 107.8 84 64.3
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.9e-20 106.7 192 30.7
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.7e-20 104.4 84 57.1
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 3.1e-18 99.4 158 34.8
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.0e-18 97.8 144 39.6
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 3.4e-17 95.9 92 56.5
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 7.2e-15 88.2 73 63.0
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.4e-13 84.0 82 48.8
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 3.9e-13 82.4 68 63.2
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 7.4e-12 78.2 55 67.3
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 1.3e-11 77.4 63 61.9
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 1.8e-10 73.6 65 64.6
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 9.1e-10 71.2 115 34.8
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 4.5e-09 68.9 48 60.4
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.7e-09 68.2 117 37.6
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 8.5e-08 64.7 48 60.4
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 7.2e-07 61.6 78 48.7
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.9e-06 58.2 38 68.4


User provided reference genes

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