Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 0.0e+00 1374.4 692 100.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.9e-251 872.1 719 63.3
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.7e-248 862.8 724 61.7
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.7e-240 834.3 727 60.5
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.5e-236 823.2 712 61.0
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 2.5e-234 815.8 730 59.9
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 9.6e-231 803.9 712 59.7
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 9.0e-229 797.3 719 59.1
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.4e-226 790.0 717 58.7
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.2e-225 786.9 718 57.9
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 7.4e-223 777.7 735 56.2
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 7.4e-223 777.7 730 56.8
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 3.7e-222 775.4 724 56.9
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.1e-221 773.9 735 56.1
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.1e-221 773.9 711 58.4
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.4e-221 773.5 712 58.0
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.8e-221 773.1 711 58.1
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.9e-220 768.1 711 57.9
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 7.7e-220 767.7 718 57.5
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 5.0e-219 765.0 694 58.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.4e-218 763.5 735 56.2
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 3.2e-218 762.3 728 56.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 5.5e-218 761.5 722 56.4
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 7.2e-218 761.1 722 56.4
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.1e-217 759.6 709 57.3
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.1e-217 759.6 709 57.5
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 8.8e-216 754.2 724 56.5
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.5e-215 753.4 755 54.2
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.5e-215 752.7 724 56.9
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.3e-215 751.9 733 55.0
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 7.4e-215 751.1 727 56.9
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.2e-214 749.6 712 57.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.2e-214 749.6 735 55.2
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.5e-212 743.4 731 55.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.0e-212 743.0 711 55.6
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.4e-212 742.3 726 56.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.0e-211 740.7 726 55.9
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.7e-211 740.0 717 55.5
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 2.2e-211 739.6 726 54.8
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 5.0e-211 738.4 715 55.2
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 8.5e-211 737.6 734 53.0
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.1e-209 731.5 722 55.1
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.1e-207 727.2 722 54.4
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.5e-207 726.9 740 53.5
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 3.5e-204 715.7 725 53.5
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 5.9e-204 714.9 740 53.4
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.0e-203 714.1 720 53.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 5.0e-203 711.8 722 53.7
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.5e-202 710.3 722 54.0
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.2e-201 707.2 703 54.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.4e-200 703.7 700 53.9
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.0e-200 702.6 716 53.2
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.4e-199 698.7 713 52.6
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.7e-198 696.8 725 52.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 8.2e-198 694.5 688 54.4
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.1e-197 694.1 719 52.3
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 9.1e-197 691.0 707 53.3
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.0e-196 689.9 704 53.3
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 2.7e-196 689.5 726 52.6
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 7.7e-196 688.0 755 50.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 2.2e-195 686.4 701 52.9
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.9e-194 683.3 718 52.8
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.5e-194 682.9 737 52.8
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 2.5e-194 682.9 732 52.7
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.1e-193 679.9 639 57.9
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.7e-193 679.5 733 51.6
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.8e-192 674.5 733 51.2
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 7.5e-191 671.4 722 52.1
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.7e-190 670.2 712 50.8
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.7e-190 670.2 710 51.1
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 8.3e-190 667.9 730 50.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 5.4e-189 665.2 730 50.5
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 9.1e-189 664.5 678 53.1
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.5e-188 662.1 723 50.3
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 5.9e-188 661.8 731 50.6
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.0e-187 661.0 722 50.8
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 5.0e-187 658.7 727 50.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 8.5e-187 657.9 730 50.1
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 4.2e-186 655.6 722 50.3
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 5.5e-186 655.2 722 50.4
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.2e-185 654.1 737 49.4
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.6e-185 653.7 720 50.7
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.1e-185 653.3 714 50.4
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.7e-185 652.9 719 49.8
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.7e-185 652.9 725 50.1
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 8.0e-185 651.4 766 47.9
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.0e-184 651.0 722 50.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.2e-183 647.5 706 49.4
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.6e-183 646.4 722 50.1
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 2.8e-182 642.9 723 50.2
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 6.3e-182 641.7 723 49.9
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.2e-180 637.5 638 54.1
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 3.8e-179 632.5 714 50.0
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.5e-178 629.8 731 48.8
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.6e-177 627.1 733 49.0
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 8.9e-176 621.3 699 50.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 9.8e-175 617.8 632 54.1
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.1e-173 614.4 676 49.3
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 9.2e-173 611.3 629 53.9
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 7.8e-172 608.2 632 51.9
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.0e-171 607.8 719 46.2
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.6e-169 599.4 718 46.4
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 8.0e-169 598.2 674 46.9
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.0e-167 593.6 720 46.5
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 9.2e-165 584.7 605 53.6
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.6e-161 572.8 807 43.4
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 3.4e-159 566.2 636 51.4
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.8e-159 565.5 700 45.7
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.5e-154 550.8 542 55.7
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.6e-153 547.4 626 48.2
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 3.1e-152 543.1 701 43.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.7e-140 503.4 772 39.4
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.9e-139 499.6 489 53.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.0e-135 487.3 642 43.1
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.5e-130 471.1 674 41.4
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 2.8e-121 440.3 817 35.4
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 4.9e-118 429.5 749 38.9
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.2e-117 426.8 728 38.5
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.9e-116 422.2 755 38.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.7e-113 413.3 715 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.2e-94 350.9 488 41.0
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.4e-88 331.6 510 40.0
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.0e-78 298.9 724 30.8
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 9.4e-77 292.4 482 35.5
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.5e-61 241.1 680 29.6
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.6e-60 237.3 445 36.9
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 3.6e-52 210.7 219 51.6
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.1e-45 189.1 224 43.3
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 9.9e-42 176.0 127 66.9
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.7e-39 167.9 210 44.8
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 3.9e-38 164.1 98 80.6
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 9.5e-37 159.5 308 35.4
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.7e-36 157.1 152 52.6
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.1e-35 156.0 171 49.1
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.4e-35 154.8 93 74.2
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.8e-31 139.8 95 66.3
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.2e-25 121.7 130 50.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 4.2e-24 117.5 118 47.5
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.3e-20 105.9 97 54.6
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.9e-16 92.0 74 56.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 6.7e-14 83.6 434 25.6
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 4.8e-12 77.4 255 29.4
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 2.9e-09 68.2 261 28.7
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 2.4e-08 65.1 243 27.6
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 2.7e-07 61.6 161 30.4
Thecc.09G293200 Theobroma cacao HOM05D001312 ORTHO05D001832 1.0e-06 59.7 321 24.3
SGA_v2.0_scaffold29G12279 Striga asiatica HOM05D001312 ORTHO05D001832 1.3e-06 59.3 172 29.7
Gohir.D09G092032 Gossypium hirsutum HOM05D001312 ORTHO05D001832 1.8e-06 58.9 324 25.3
Gorai.006G108600 Gossypium raimondii HOM05D001312 ORTHO05D001832 1.8e-06 58.9 324 25.3
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 2.3e-06 58.5 195 29.7
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 3.0e-06 58.2 172 30.2
PGR119G2014 Punica granatum HOM05D001312 ORTHO05D001832 3.0e-06 58.2 198 28.8
Actinidia07206 Actinidia chinensis HOM05D001312 ORTHO05D001832 3.9e-06 57.8 178 30.9
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 3.9e-06 57.8 284 23.9
DCAR_018746 Daucus carota HOM05D001312 ORTHO05D001832 3.9e-06 57.8 178 28.1
Zm00001eb406520 Zea mays HOM05D001312 ORTHO05D001832 3.9e-06 57.8 152 31.6
Glyma.13G320100 Glycine max HOM05D001312 ORTHO05D001832 5.1e-06 57.4 150 31.3
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 6.7e-06 57.0 161 28.6
Nn6g35082 Nelumbo nucifera HOM05D001312 ORTHO05D001832 6.7e-06 57.0 160 30.0
Actinidia24175 Actinidia chinensis HOM05D001312 ORTHO05D001832 8.7e-06 56.6 196 30.1
SEGI_08770 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 8.7e-06 56.6 154 29.2


User provided reference genes

Program Settings