Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 6.3e-43 177.2 99 100.0
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.2e-12 76.6 92 48.9
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.6e-12 75.5 91 48.4
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.6e-12 75.5 91 48.4
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-12 75.5 85 47.1
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 3.4e-12 75.1 41 82.9
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 3.4e-12 75.1 93 48.4
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 9.9e-12 73.6 45 68.9
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 9.9e-12 73.6 45 68.9
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.3e-11 73.2 104 43.3
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.3e-11 73.2 67 55.2
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.3e-11 73.2 45 66.7
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.7e-11 72.8 93 44.1
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.7e-11 71.6 42 69.0
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.7e-11 71.6 88 45.5
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 4.9e-11 71.2 56 57.1
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 4.9e-11 71.2 99 43.4
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 6.4e-11 70.9 63 58.7
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.4e-11 70.9 58 53.4
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.4e-11 70.9 58 53.4
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 8.3e-11 70.5 70 51.4
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.1e-10 70.1 44 65.9
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.1e-10 70.1 63 55.6
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.4e-10 69.7 37 78.4
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.4e-10 69.7 37 78.4
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.9e-10 69.3 60 51.7
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.9e-10 69.3 70 50.0
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 3.2e-10 68.6 43 72.1
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 3.2e-10 68.6 94 43.6
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.2e-10 68.6 37 75.7
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 3.2e-10 68.6 66 50.0
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 4.1e-10 68.2 100 43.0
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 4.1e-10 68.2 56 53.6
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 4.1e-10 68.2 42 69.0
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 4.1e-10 68.2 37 78.4
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 5.4e-10 67.8 107 42.1
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 5.4e-10 67.8 43 69.8
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 5.4e-10 67.8 44 63.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 7.1e-10 67.4 37 73.0
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 7.1e-10 67.4 44 68.2
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 7.1e-10 67.4 94 47.9
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 9.2e-10 67.0 99 42.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 9.2e-10 67.0 57 52.6
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.2e-09 66.6 37 78.4
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 1.2e-09 66.6 61 54.1
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.2e-09 66.6 71 47.9
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.6e-09 66.2 49 57.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.6e-09 66.2 37 75.7
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.6e-09 66.2 37 75.7
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.6e-09 66.2 37 75.7
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.6e-09 66.2 37 70.3
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.6e-09 66.2 103 39.8
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 2.7e-09 65.5 94 40.4
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.7e-09 65.5 36 72.2
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.7e-09 65.5 41 63.4
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.7e-09 65.5 50 64.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.5e-09 65.1 37 70.3
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 3.5e-09 65.1 68 48.5
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 3.5e-09 65.1 44 65.9
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 3.5e-09 65.1 60 50.0
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 4.6e-09 64.7 37 75.7
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.6e-09 64.7 37 70.3
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.6e-09 64.7 83 43.4
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 6.0e-09 64.3 39 69.2
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 7.8e-09 63.9 36 75.0
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.0e-08 63.5 43 60.5
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.0e-08 63.5 59 45.8
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.0e-08 63.5 44 56.8
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.0e-08 63.5 49 59.2
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.0e-08 63.5 100 38.0
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 1.3e-08 63.2 37 78.4
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.7e-08 62.8 50 56.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 2.3e-08 62.4 37 62.2
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.3e-08 62.4 106 35.8
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.0e-08 62.0 37 70.3
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 3.0e-08 62.0 40 62.5
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 3.0e-08 62.0 40 62.5
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 3.0e-08 62.0 43 60.5
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.9e-08 61.6 37 67.6
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.9e-08 61.6 86 44.2
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.9e-08 61.6 86 44.2
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 5.1e-08 61.2 53 52.8
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 5.1e-08 61.2 43 60.5
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 5.1e-08 61.2 64 45.3
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 5.1e-08 61.2 48 52.1
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 5.1e-08 61.2 87 44.8
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.1e-08 61.2 44 63.6
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 6.6e-08 60.8 86 45.3
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 6.6e-08 60.8 37 67.6
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 6.6e-08 60.8 59 49.2
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 6.6e-08 60.8 33 69.7
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 8.6e-08 60.5 37 67.6
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 8.6e-08 60.5 86 40.7
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.1e-07 60.1 43 60.5
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.1e-07 60.1 38 68.4
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.1e-07 60.1 37 59.5
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.5e-07 59.7 83 41.0
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.5e-07 59.7 37 67.6
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.5e-07 59.7 79 49.4
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.5e-07 59.7 43 65.1
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.5e-07 59.7 100 36.0
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.9e-07 59.3 92 40.2
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.5e-07 58.9 97 36.1
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.5e-07 58.9 37 67.6
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.5e-07 58.9 38 65.8
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 2.5e-07 58.9 63 41.3
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.5e-07 58.9 58 55.2
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 2.5e-07 58.9 38 65.8
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 2.5e-07 58.9 102 37.3
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.5e-07 58.9 35 71.4
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 3.3e-07 58.5 37 67.6
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 4.3e-07 58.2 36 66.7
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.3e-07 58.2 49 53.1
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 4.3e-07 58.2 35 74.3
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 4.3e-07 58.2 32 71.9
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 4.3e-07 58.2 70 47.1
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 4.3e-07 58.2 70 47.1
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 4.3e-07 58.2 96 38.5
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.3e-07 57.4 47 46.8
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.3e-07 57.4 100 38.0
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 1.2e-06 56.6 67 52.2
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.2e-06 56.6 43 60.5
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 1.6e-06 56.2 74 47.3
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.6e-06 56.2 50 50.0
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.8e-06 55.5 68 39.7
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 3.6e-06 55.1 42 54.8
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 4.7e-06 54.7 42 57.1
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.7e-06 54.7 65 44.6
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 4.7e-06 54.7 62 45.2
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 6.2e-06 54.3 38 63.2
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 6.2e-06 54.3 38 63.2
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 8.1e-06 53.9 38 60.5
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 8.1e-06 53.9 38 60.5


User provided reference genes

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