Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1805 Cannabis sativa HOM05D007264 ORTHO05D008639 6.1e-70 267.7 170 100.0
FAN25G3374 Fragaria x ananassa HOM05D007264 ORTHO05D008639 1.4e-29 133.7 168 45.2
FvH4_3g36880 Fragaria vesca HOM05D007264 ORTHO05D008639 3.1e-29 132.5 169 45.0
FAN11G3606 Fragaria x ananassa HOM05D007264 ORTHO05D008639 3.1e-29 132.5 169 45.0
FAN21G2492 Fragaria x ananassa HOM05D007264 ORTHO05D008639 4.0e-29 132.1 168 45.2
Prupe.6G071500 Prunus persica HOM05D007264 ORTHO05D008639 5.8e-28 128.3 167 46.1
RcHm_v2.0_Chr5g0066101 Rosa chinensis HOM05D007264 ORTHO05D008639 5.8e-28 128.3 168 45.2
QL01p030632 Quercus lobata HOM05D007264 ORTHO05D008639 4.1e-26 122.1 168 47.0
Ciclev10029397m.g Citrus clementina HOM05D007264 ORTHO05D008639 6.6e-24 114.8 171 46.2
Dinv17036 Davidia involucrata HOM05D007264 ORTHO05D008639 4.3e-23 112.1 173 46.8
Dinv42982 Davidia involucrata HOM05D007264 ORTHO05D008639 4.3e-23 112.1 173 46.8
Dinv43117 Davidia involucrata HOM05D007264 ORTHO05D008639 4.3e-23 112.1 173 46.8
Haze_24148 Corylus avellana HOM05D007264 ORTHO05D008639 1.2e-22 110.5 169 45.6
Cfa011538 Carpinus fangiana HOM05D007264 ORTHO05D008639 6.2e-22 108.2 170 45.3
MD03G1086900 Malus domestica HOM05D007264 ORTHO05D008639 1.8e-21 106.7 174 44.8
COL.COLO4_18565 Corchorus olitorius HOM05D007264 ORTHO05D008639 5.2e-21 105.1 175 44.0
TWI79G0692 Tripterygium wilfordii HOM05D007264 ORTHO05D008639 5.2e-21 105.1 167 44.3
CiPaw.14G066400 Carya illinoinensis HOM05D007264 ORTHO05D008639 2.6e-20 102.8 169 42.0
Thecc.09G317100 Theobroma cacao HOM05D007264 ORTHO05D008639 2.9e-19 99.4 174 42.5
MD11G1096000 Malus domestica HOM05D007264 ORTHO05D008639 4.9e-19 98.6 170 40.6
Atru.chr3.3962 Acer truncatum HOM05D007264 ORTHO05D008639 1.9e-18 96.7 158 54.4
TAR560G0010 Trochodendron aralioides HOM05D007264 ORTHO05D008639 9.3e-18 94.4 174 41.4
TAR623G1366 Trochodendron aralioides HOM05D007264 ORTHO05D008639 4.6e-17 92.0 174 40.8
vmacro03038 Vaccinium macrocarpon HOM05D007264 ORTHO05D008639 4.6e-17 92.0 172 41.3
Eucgr.J02035 Eucalyptus grandis HOM05D007264 ORTHO05D008639 6.0e-17 91.7 172 40.1
MBI14_g08028_MAGBIO Magnolia biondii HOM05D007264 ORTHO05D008639 7.8e-17 91.3 133 45.9
Nn8g40679 Nelumbo nucifera HOM05D007264 ORTHO05D008639 2.3e-16 89.7 170 40.0
Gorai.001G112100 Gossypium raimondii HOM05D007264 ORTHO05D008639 3.9e-16 89.0 169 39.1
AL41U10070 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 6.6e-16 88.2 168 37.5
GSVIVG01024917001 Vitis vinifera HOM05D007264 ORTHO05D008639 1.1e-15 87.4 171 41.5
CSS0034107 Camellia sinensis var. sinensis HOM05D007264 ORTHO05D008639 1.9e-15 86.7 172 44.2
AL4G23740 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 3.3e-15 85.9 168 36.9
Potri.001G243500 Populus trichocarpa HOM05D007264 ORTHO05D008639 4.3e-15 85.5 172 37.2
EL10Ac7g16055 Beta vulgaris HOM05D007264 ORTHO05D008639 5.6e-15 85.1 143 40.6
Gohir.A07G099900 Gossypium hirsutum HOM05D007264 ORTHO05D008639 5.6e-15 85.1 171 37.4
Sopen05g005050 Solanum pennellii HOM05D007264 ORTHO05D008639 5.6e-15 85.1 177 41.2
Gohir.D07G104200 Gossypium hirsutum HOM05D007264 ORTHO05D008639 7.3e-15 84.7 173 38.7
Peaxi162Scf00038g02028 Petunia axillaris HOM05D007264 ORTHO05D008639 7.3e-15 84.7 180 40.0
Migut.D00885 Erythranthe guttata HOM05D007264 ORTHO05D008639 2.1e-14 83.2 143 39.9
Cc01_g13240 Coffea canephora HOM05D007264 ORTHO05D008639 2.8e-14 82.8 166 38.0
Manes.01G170100 Manihot esculenta HOM05D007264 ORTHO05D008639 3.6e-14 82.4 173 39.9
Solyc05g009300.1 Solanum lycopersicum HOM05D007264 ORTHO05D008639 6.2e-14 81.6 174 40.2
Sabra16G0147800 Salix brachista HOM05D007264 ORTHO05D008639 1.1e-13 80.9 186 33.9
PGSC0003DMG400014567 Solanum tuberosum HOM05D007264 ORTHO05D008639 1.1e-13 80.9 170 39.4
Duzib168G0085 Durio zibethinus HOM05D007264 ORTHO05D008639 3.1e-13 79.3 143 39.9
MELO3C025896.2 Cucumis melo HOM05D007264 ORTHO05D008639 9.0e-13 77.8 171 37.4
PGR119G0519 Punica granatum HOM05D007264 ORTHO05D008639 2.6e-12 76.3 159 39.6
ClCG02G019960 Citrullus lanatus HOM05D007264 ORTHO05D008639 5.8e-12 75.1 169 39.1
Sed0006840 Sechium edule HOM05D007264 ORTHO05D008639 5.8e-12 75.1 169 40.2
Lsat_1_v5_gn_5_169441 Lactuca sativa HOM05D007264 ORTHO05D008639 9.9e-12 74.3 48 75.0
AT2G29180 Arabidopsis thaliana HOM05D007264 ORTHO05D008639 1.3e-11 73.9 181 35.4
Lalb_Chr24g0394031 Lupinus albus HOM05D007264 ORTHO05D008639 2.2e-11 73.2 138 37.7
ATR0559G356 Amborella trichopoda HOM05D007264 ORTHO05D008639 6.4e-11 71.6 137 38.0
CARHR122460 Cardamine hirsuta HOM05D007264 ORTHO05D008639 1.1e-10 70.9 121 43.8
arahy.Tifrunner.gnm1.ann1.4DS88F Arachis hypogaea HOM05D007264 ORTHO05D008639 1.4e-10 70.5 175 34.3
CsaV3_6G016660 Cucumis sativus L. HOM05D007264 ORTHO05D008639 1.4e-10 70.5 167 35.3
Nitab4.5_0014843g0020 Nicotiana tabacum HOM05D007264 ORTHO05D008639 1.4e-10 70.5 182 34.6
Medtr2g097680 Medicago truncatula HOM05D007264 ORTHO05D008639 5.4e-10 68.6 161 36.0
PSO339G5862 Papaver somniferum HOM05D007264 ORTHO05D008639 7.1e-10 68.2 169 32.5
arahy.Tifrunner.gnm1.ann1.EHGE9H Arachis hypogaea HOM05D007264 ORTHO05D008639 9.3e-10 67.8 164 33.5
Nn2g13417 Nelumbo nucifera HOM05D007264 ORTHO05D008639 1.2e-09 67.4 108 43.5
Carub.0004s1020 Capsella rubella HOM05D007264 ORTHO05D008639 2.7e-09 66.2 170 32.4
ECA248G2900 Erigeron canadensis HOM05D007264 ORTHO05D008639 6.0e-09 65.1 143 36.4
Medtr1g071380 Medicago truncatula HOM05D007264 ORTHO05D008639 7.9e-09 64.7 161 37.3
Actinidia33776 Actinidia chinensis HOM05D007264 ORTHO05D008639 1.0e-08 64.3 171 38.0
MSTRG.11098 Avicennia marina HOM05D007264 ORTHO05D008639 1.0e-08 64.3 172 31.4
AUR62020022 Chenopodium quinoa HOM05D007264 ORTHO05D008639 1.0e-08 64.3 93 46.2
CDE04G3075 Ceratophyllum demersum HOM05D007264 ORTHO05D008639 2.3e-08 63.2 110 40.0
TAR369G0859 Trochodendron aralioides HOM05D007264 ORTHO05D008639 2.3e-08 63.2 110 38.2
DCAR_005951 Daucus carota HOM05D007264 ORTHO05D008639 3.9e-08 62.4 175 33.1
Sp4g11990 Schrenkiella parvula HOM05D007264 ORTHO05D008639 6.7e-08 61.6 175 34.9
THA.LOC104800684 Tarenaya hassleriana HOM05D007264 ORTHO05D008639 6.7e-08 61.6 46 71.7
Glyma.15G035800 Glycine max HOM05D007264 ORTHO05D008639 8.7e-08 61.2 129 38.0
Cpa.g.sc81.107 Carica papaya HOM05D007264 ORTHO05D008639 1.1e-07 60.8 173 36.4
Oeu002436.1 Olea europaea HOM05D007264 ORTHO05D008639 1.5e-07 60.5 177 32.8
Aqoxy1G00887 Aquilegia oxysepala HOM05D007264 ORTHO05D008639 1.9e-07 60.1 167 33.5
PSO513G0105 Papaver somniferum HOM05D007264 ORTHO05D008639 2.5e-07 59.7 169 34.3
SGA_v2.0_scaffold111G31536 Striga asiatica HOM05D007264 ORTHO05D008639 2.5e-07 59.7 200 31.0
Aa31LG5G7130 Aethionema arabicum HOM05D007264 ORTHO05D008639 4.3e-07 58.9 47 70.2
A02p43580 Brassica napus HOM05D007264 ORTHO05D008639 5.6e-07 58.5 49 71.4
BcaB01g03133 Brassica carinata HOM05D007264 ORTHO05D008639 7.4e-07 58.2 138 37.0
Ah.15g098550 Amaranthus hybridus HOM05D007264 ORTHO05D008639 9.6e-07 57.8 144 36.8
BraA02t09285Z Brassica rapa HOM05D007264 ORTHO05D008639 9.6e-07 57.8 49 69.4
Lj3g0004900 Lotus japonicus HOM05D007264 ORTHO05D008639 9.6e-07 57.8 161 34.8
Oeu002437.1 Olea europaea HOM05D007264 ORTHO05D008639 9.6e-07 57.8 177 31.6
HanXRQChr01g0010441 Helianthus annuus HOM05D007264 ORTHO05D008639 1.3e-06 57.4 49 65.3
BolC2t12437H Brassica oleracea HOM05D007264 ORTHO05D008639 1.6e-06 57.0 169 32.5
Hund18892 Selenicereus undatus HOM05D007264 ORTHO05D008639 1.6e-06 57.0 94 40.4
Nitab4.5_0006942g0010 Nicotiana tabacum HOM05D007264 ORTHO05D008639 3.7e-06 55.8 137 35.8
BcaC03g18293 Brassica carinata HOM05D007264 ORTHO05D008639 6.2e-06 55.1 169 32.0
C02p63690 Brassica napus HOM05D007264 ORTHO05D008639 6.2e-06 55.1 169 32.0


User provided reference genes

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