Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0154 Cannabis sativa HOM05D005939 ORTHO05D007412 3.2e-50 201.4 101 100.0
CANSAT54G1728 Cannabis sativa HOM05D005939 ORTHO05D007412 3.2e-50 201.4 101 100.0
CANSAT64G1160 Cannabis sativa HOM05D005939 ORTHO05D007412 1.8e-48 195.7 99 99.0
GSVIVG01038097001 Vitis vinifera HOM05D005939 ORTHO05D007412 1.2e-20 103.2 107 57.9
Prupe.1G203000 Prunus persica HOM05D005939 ORTHO05D007412 2.0e-20 102.4 109 56.9
Sed0015623 Sechium edule HOM05D005939 ORTHO05D007412 2.9e-19 98.6 107 54.2
CiPaw.01G172900 Carya illinoinensis HOM05D005939 ORTHO05D007412 1.9e-18 95.9 104 54.8
QL10p052591 Quercus lobata HOM05D005939 ORTHO05D007412 2.5e-18 95.5 104 52.9
CsaV3_4G002650 Cucumis sativus L. HOM05D005939 ORTHO05D007412 9.4e-18 93.6 104 52.9
Haze_01409 Corylus avellana HOM05D005939 ORTHO05D007412 1.2e-17 93.2 104 55.8
arahy.Tifrunner.gnm1.ann1.K9Q8M8 Arachis hypogaea HOM05D005939 ORTHO05D007412 2.7e-17 92.0 107 55.1
Dinv44170 Davidia involucrata HOM05D005939 ORTHO05D007412 2.7e-17 92.0 105 52.4
Eucgr.C02176 Eucalyptus grandis HOM05D005939 ORTHO05D007412 3.6e-17 91.7 108 50.0
PSO675G4893 Papaver somniferum HOM05D005939 ORTHO05D007412 3.6e-17 91.7 109 50.5
arahy.Tifrunner.gnm1.ann1.2A1NT4 Arachis hypogaea HOM05D005939 ORTHO05D007412 6.1e-17 90.9 107 54.2
Atru.chr4.1353 Acer truncatum HOM05D005939 ORTHO05D007412 7.9e-17 90.5 109 54.1
Medtr4g068190 Medicago truncatula HOM05D005939 ORTHO05D007412 2.3e-16 89.0 105 49.5
arahy.Tifrunner.gnm1.ann1.LDUK9I Arachis hypogaea HOM05D005939 ORTHO05D007412 5.1e-16 87.8 105 53.3
PSO017G1523 Papaver somniferum HOM05D005939 ORTHO05D007412 6.7e-16 87.4 108 46.3
TAR365G0833 Trochodendron aralioides HOM05D005939 ORTHO05D007412 6.7e-16 87.4 110 52.7
Ciclev10021893m.g Citrus clementina HOM05D005939 ORTHO05D007412 8.8e-16 87.0 107 52.3
CSS0033753 Camellia sinensis var. sinensis HOM05D005939 ORTHO05D007412 1.1e-15 86.7 106 48.1
Haze_01405 Corylus avellana HOM05D005939 ORTHO05D007412 1.1e-15 86.7 92 56.5
Manes.04G037900 Manihot esculenta HOM05D005939 ORTHO05D007412 1.5e-15 86.3 112 47.3
Actinidia27098 Actinidia chinensis HOM05D005939 ORTHO05D007412 3.3e-15 85.1 105 50.5
MELO3C017776.2 Cucumis melo HOM05D005939 ORTHO05D007412 5.7e-15 84.3 84 53.6
Cpa.g.sc9.337 Carica papaya HOM05D005939 ORTHO05D007412 9.7e-15 83.6 72 62.5
Lj2C294T20 Lonicera japonica HOM05D005939 ORTHO05D007412 9.7e-15 83.6 105 49.5
Sabra17G0005000 Salix brachista HOM05D005939 ORTHO05D007412 9.7e-15 83.6 123 52.0
Sabra17G0013700 Salix brachista HOM05D005939 ORTHO05D007412 9.7e-15 83.6 123 52.0
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 1.3e-14 83.2 104 49.0
Hma1.2p1_1220F.1_g268040 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 2.8e-14 82.0 107 46.7
ClCG07G015100 Citrullus lanatus HOM05D005939 ORTHO05D007412 3.7e-14 81.6 84 52.4
Thecc.04G170700 Theobroma cacao HOM05D005939 ORTHO05D007412 3.7e-14 81.6 103 47.6
Gohir.D02G110500 Gossypium hirsutum HOM05D005939 ORTHO05D007412 6.3e-14 80.9 104 44.2
Gorai.005G125400 Gossypium raimondii HOM05D005939 ORTHO05D007412 6.3e-14 80.9 104 44.2
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 6.3e-14 80.9 107 48.6
Ca_20809_v3 Cicer arietinum L. HOM05D005939 ORTHO05D007412 8.2e-14 80.5 106 48.1
Phvul.011G051700 Phaseolus vulgaris HOM05D005939 ORTHO05D007412 8.2e-14 80.5 104 46.2
Potri.007G134600 Populus trichocarpa HOM05D005939 ORTHO05D007412 1.1e-13 80.1 118 48.3
Duzib212G0518 Durio zibethinus HOM05D005939 ORTHO05D007412 1.4e-13 79.7 103 47.6
Glyma.11G124900 Glycine max HOM05D005939 ORTHO05D007412 1.4e-13 79.7 104 47.1
vmacro00653 Vaccinium macrocarpon HOM05D005939 ORTHO05D007412 1.8e-13 79.3 83 50.6
Glyma.12G049500 Glycine max HOM05D005939 ORTHO05D007412 3.1e-13 78.6 104 47.1
TPR.G34240 Trifolium pratense HOM05D005939 ORTHO05D007412 5.3e-13 77.8 107 49.5
arahy.Tifrunner.gnm1.ann1.KLQZ1V Arachis hypogaea HOM05D005939 ORTHO05D007412 7.0e-13 77.4 59 62.7
Potri.017G017500 Populus trichocarpa HOM05D005939 ORTHO05D007412 7.0e-13 77.4 122 47.5
arahy.Tifrunner.gnm1.ann1.D82PE3 Arachis hypogaea HOM05D005939 ORTHO05D007412 9.1e-13 77.0 84 51.2
Hma1.2p1_1220F.1_g268050 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 9.1e-13 77.0 105 45.7
THA.LOC104803948 Tarenaya hassleriana HOM05D005939 ORTHO05D007412 1.2e-12 76.6 103 45.6
Psat7g208400 Pisum sativum HOM05D005939 ORTHO05D007412 1.6e-12 76.3 104 51.0
Sp4g25670 Schrenkiella parvula HOM05D005939 ORTHO05D007412 2.0e-12 75.9 99 45.5
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 3.5e-12 75.1 103 43.7
EL10Ac3g06033 Beta vulgaris HOM05D005939 ORTHO05D007412 3.5e-12 75.1 100 43.0
arahy.Tifrunner.gnm1.ann1.A48KP8 Arachis hypogaea HOM05D005939 ORTHO05D007412 4.5e-12 74.7 67 59.7
Lj3g0005991 Lotus japonicus HOM05D005939 ORTHO05D007412 4.5e-12 74.7 108 41.7
TAR371G0104 Trochodendron aralioides HOM05D000577 ORTHO05D001093 5.9e-12 74.3 73 54.8
arahy.Tifrunner.gnm1.ann1.4S56Q7 Arachis hypogaea HOM05D005939 ORTHO05D026929 7.7e-12 73.9 46 76.1
AT2G43560 Arabidopsis thaliana HOM05D005939 ORTHO05D007412 1.3e-11 73.2 103 46.6
Cc06_g20200 Coffea canephora HOM05D005939 ORTHO05D007412 1.3e-11 73.2 106 42.5
Thhalv10001621m.g Eutrema salsugineum HOM05D005939 ORTHO05D007412 1.3e-11 73.2 108 45.4
arahy.Tifrunner.gnm1.ann1.V738A9 Arachis hypogaea HOM05D005939 ORTHO05D007412 1.7e-11 72.8 103 46.6
Hund03189 Selenicereus undatus HOM05D005939 ORTHO05D007412 1.7e-11 72.8 103 44.7
MSTRG.22020 Avicennia marina HOM05D005939 ORTHO05D007412 2.2e-11 72.4 104 44.2
AL4G42360 Arabidopsis lyrata HOM05D005939 ORTHO05D007412 3.8e-11 71.6 109 46.8
arahy.Tifrunner.gnm1.ann1.51RH0H Arachis hypogaea HOM05D005939 ORTHO05D007412 3.8e-11 71.6 48 68.8
AUR62023817 Chenopodium quinoa HOM05D000031 ORTHO05D007412 8.5e-11 70.5 74 54.1
Aa31LG1G25290 Aethionema arabicum HOM05D005939 ORTHO05D007412 1.5e-10 69.7 103 42.7
BcaB06g29327 Brassica carinata HOM05D005939 ORTHO05D007412 1.5e-10 69.7 99 46.5
AUR62002369 Chenopodium quinoa HOM05D005939 ORTHO05D007412 1.5e-10 69.7 48 70.8
FAN07G1487 Fragaria x ananassa HOM05D005939 ORTHO05D007412 1.5e-10 69.7 101 41.6
Lalb_Chr03g0026021 Lupinus albus HOM05D005939 ORTHO05D007412 1.5e-10 69.7 59 52.5
Nn1g09731 Nelumbo nucifera HOM05D005939 ORTHO05D007412 1.9e-10 69.3 105 41.9
RcHm_v2.0_Chr4g0406301 Rosa chinensis HOM05D005939 ORTHO05D007412 1.9e-10 69.3 103 41.7
Zm00001eb037280 Zea mays HOM05D005939 ORTHO05D007412 2.5e-10 68.9 106 44.3
ECA238G2261 Erigeron canadensis HOM05D005939 ORTHO05D007412 3.2e-10 68.6 107 44.9
FAN12G1526 Fragaria x ananassa HOM05D005939 ORTHO05D007412 3.2e-10 68.6 99 42.4
Peaxi162Scf00811g00112 Petunia axillaris HOM05D005939 ORTHO05D007412 3.2e-10 68.6 110 43.6
Nitab4.5_0006294g0010 Nicotiana tabacum HOM05D005939 ORTHO05D007412 4.2e-10 68.2 110 42.7
arahy.Tifrunner.gnm1.ann1.1BT4II Arachis hypogaea HOM05D005939 ORTHO05D007412 5.5e-10 67.8 99 39.4
Aqoxy2G04151 Aquilegia oxysepala HOM05D005939 ORTHO05D007412 7.2e-10 67.4 70 51.4
BcaC02g07165 Brassica carinata HOM05D005939 ORTHO05D007412 7.2e-10 67.4 99 44.4
BolC4t28556H Brassica oleracea HOM05D005939 ORTHO05D007412 7.2e-10 67.4 99 44.4
Carub.0004s2605 Capsella rubella HOM05D005939 ORTHO05D007412 9.4e-10 67.0 106 44.3
CAN.G1263.30 Capsicum annuum HOM05D005939 ORTHO05D007412 1.2e-09 66.6 75 49.3
Gohir.A02G092400 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.2e-09 66.6 72 47.2
BraA04t18746Z Brassica rapa HOM05D005939 ORTHO05D007412 1.6e-09 66.2 99 43.4
FvH4_4g10650 Fragaria vesca HOM05D005939 ORTHO05D007412 2.1e-09 65.9 99 38.4
FAN12G0599 Fragaria x ananassa HOM05D005939 ORTHO05D007412 2.1e-09 65.9 99 38.4
FAN12G3158 Fragaria x ananassa HOM05D005939 ORTHO05D007412 2.1e-09 65.9 99 38.4
HanXRQChr14g0433821 Helianthus annuus HOM05D005939 ORTHO05D007412 2.1e-09 65.9 103 45.6
Oeu032137.1 Olea europaea HOM05D005939 ORTHO05D007412 2.7e-09 65.5 105 41.9
PGR044G0374 Punica granatum HOM05D005939 ORTHO05D007412 4.7e-09 64.7 109 42.2
Ah.13g073680 Amaranthus hybridus HOM05D005939 ORTHO05D007412 6.1e-09 64.3 71 50.7
Gohir.A10G186300 Gossypium hirsutum HOM05D005939 ORTHO05D007412 8.0e-09 63.9 65 49.2
Nitab4.5_0000147g0370 Nicotiana tabacum HOM05D005939 ORTHO05D007412 1.0e-08 63.5 111 44.1
Migut.N03077 Erythranthe guttata HOM05D005939 ORTHO05D007412 1.4e-08 63.2 103 39.8
Lsat_1_v5_gn_2_34361 Lactuca sativa HOM05D005939 ORTHO05D007412 1.4e-08 63.2 111 38.7
Solyc04g015040.3 Solanum lycopersicum HOM05D005939 ORTHO05D007412 1.8e-08 62.8 111 41.4
Sopen04g007060 Solanum pennellii HOM05D005939 ORTHO05D007412 1.8e-08 62.8 111 41.4
PGSC0003DMG400015011 Solanum tuberosum HOM05D005939 ORTHO05D007412 3.0e-08 62.0 76 44.7
Os08g0541400 Oryza sativa ssp. japonica HOM05D005939 ORTHO05D007412 5.2e-08 61.2 51 58.8
HPP92_001251 Vanilla planifolia HOM05D005939 ORTHO05D007412 5.2e-08 61.2 109 40.4
SalBow6G6570 Salvia bowleyana HOM05D000739 ORTHO05D007412 6.7e-08 60.8 90 43.3
HPP92_001268 Vanilla planifolia HOM05D005939 ORTHO05D007412 1.5e-07 59.7 108 39.8
Sc05g0005150 Simmondsia chinensis HOM05D005939 ORTHO05D007412 2.6e-07 58.9 48 64.6
CDE02G1670 Ceratophyllum demersum HOM05D005939 ORTHO05D007412 3.3e-07 58.5 43 55.8
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 7.5e-07 57.4 71 46.5
A04p32840 Brassica napus HOM05D005939 ORTHO05D007412 7.5e-07 57.4 47 59.6
C04p70550 Brassica napus HOM05D005939 ORTHO05D007412 7.5e-07 57.4 47 59.6
Gohir.A10G113742 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.3e-06 56.6 41 63.4
Gohir.D07G207866 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.7e-06 56.2 42 61.9
unitig_578.g16716 Utricularia gibba HOM05D005939 ORTHO05D007412 2.8e-06 55.5 62 50.0
Gorai.001G234400 Gossypium raimondii HOM05D005939 ORTHO05D007412 4.8e-06 54.7 42 59.5
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 8.2e-06 53.9 34 70.6
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 8.2e-06 53.9 34 70.6


User provided reference genes

Program Settings