Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.1e-173 611.7 308 100.0
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.0e-119 433.0 300 74.7
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 8.4e-118 427.6 300 73.7
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 5.4e-117 424.9 290 71.7
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.7e-115 419.9 300 70.7
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.0e-115 419.1 291 70.8
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.3e-114 415.6 258 79.1
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.4e-112 410.2 303 68.6
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 6.9e-112 407.9 303 68.3
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 9.0e-112 407.5 301 70.1
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 9.0e-112 407.5 294 71.4
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 2.6e-111 406.0 303 68.6
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 2.6e-111 406.0 300 70.3
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.4e-111 405.6 327 63.9
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 3.8e-110 402.1 288 69.8
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.9e-109 399.8 274 71.9
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 9.3e-109 397.5 296 68.2
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-108 396.7 337 61.4
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.3e-107 393.7 297 67.0
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.7e-107 393.3 297 67.3
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 2.3e-107 392.9 299 67.6
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 3.0e-107 392.5 291 68.0
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.5e-106 389.4 289 69.2
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 4.3e-106 388.7 303 67.3
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 5.6e-106 388.3 297 67.0
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 2.8e-105 386.0 273 71.4
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.0e-104 382.1 272 70.2
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 2.0e-103 379.8 310 62.9
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.6e-103 379.4 272 68.4
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 9.9e-103 377.5 256 74.6
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 1.3e-102 377.1 292 65.8
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.3e-102 377.1 292 65.8
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.7e-102 376.7 308 62.3
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.9e-102 375.9 282 66.0
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 4.9e-102 375.2 294 65.3
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.1e-101 374.0 273 69.6
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 5.4e-101 371.7 272 68.0
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 7.1e-101 371.3 316 60.1
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 7.1e-101 371.3 275 66.5
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 9.3e-101 370.9 297 64.0
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.6e-100 370.2 267 66.7
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 2.1e-100 369.8 293 67.6
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 2.7e-100 369.4 295 65.8
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 4.6e-100 368.6 331 59.8
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 6.0e-100 368.2 273 67.8
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 6.0e-100 368.2 273 68.5
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.0e-99 367.5 311 62.1
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.3e-99 367.1 293 63.8
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.8e-99 366.7 262 69.1
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.3e-99 366.3 301 64.5
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 2.3e-99 366.3 294 63.3
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 3.0e-99 365.9 293 64.2
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 5.1e-99 365.2 297 63.6
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 6.7e-99 364.8 306 63.4
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 1.9e-98 363.2 306 63.1
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.5e-98 362.8 304 61.8
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 4.3e-98 362.1 300 63.7
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 4.3e-98 362.1 300 63.0
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 7.4e-98 361.3 282 64.9
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 9.6e-98 360.9 305 63.0
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.6e-97 360.1 306 62.4
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.6e-97 360.1 306 62.4
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.6e-97 360.1 306 62.4
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.6e-97 360.1 278 68.0
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 3.7e-97 359.0 356 54.8
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 6.2e-97 358.2 304 61.2
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.1e-96 357.5 262 66.4
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 1.8e-96 356.7 247 69.6
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.4e-96 356.3 295 62.4
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 4.0e-96 355.5 311 61.4
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 6.9e-96 354.8 298 62.4
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 6.9e-96 354.8 274 64.6
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 9.0e-96 354.4 257 65.8
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 2.6e-95 352.8 240 69.6
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 4.5e-95 352.1 267 64.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 4.5e-95 352.1 301 63.8
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.8e-95 351.7 277 63.9
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.9e-94 349.4 259 68.3
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.9e-94 349.4 259 68.3
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.8e-94 349.0 314 58.3
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.4e-93 347.1 237 73.8
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.2e-92 344.0 275 66.2
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.1e-92 343.2 310 59.0
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 3.9e-91 339.0 269 63.2
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.5e-90 337.0 269 63.2
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 4.8e-89 332.0 232 73.3
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 4.8e-89 332.0 267 61.8
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.4e-88 330.5 296 61.1
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 6.9e-88 328.2 279 59.9
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 9.0e-88 327.8 312 57.7
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.6e-87 326.2 316 56.6
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 3.4e-87 325.9 212 71.7
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 7.1e-85 318.2 296 58.4
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 7.9e-84 314.7 287 59.6
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 7.9e-84 314.7 287 59.6
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 7.9e-84 314.7 287 59.6
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.1e-82 310.8 286 59.1
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.3e-81 307.4 278 58.6
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 5.3e-80 302.0 240 60.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.0e-78 297.7 214 69.6
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.5e-78 295.0 262 58.4
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.5e-77 293.1 236 60.6
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.1e-76 290.0 287 56.8
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 2.8e-73 279.6 247 60.3
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 7.7e-71 271.6 460 39.3
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.9e-68 261.5 213 62.0
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.1e-66 257.7 268 49.6
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 5.7e-66 255.4 214 59.3
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 8.2e-65 251.5 254 51.6
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.2e-63 247.7 234 54.3
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 2.0e-63 246.9 191 63.9
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 3.5e-55 219.5 172 65.1
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 7.7e-55 218.4 235 47.7
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.1e-52 210.3 162 63.0
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.5e-50 204.1 164 61.6
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.1e-44 182.2 154 61.0
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.3e-43 180.3 215 48.8
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 1.8e-40 170.6 128 71.1
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 7.7e-39 165.2 299 36.1
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.0e-38 164.9 115 66.1
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.1e-37 161.4 120 68.3
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.6e-36 157.5 150 52.0
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.4e-35 154.5 108 70.4
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 7.0e-32 142.1 101 67.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 2.0e-31 140.6 90 72.2
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 3.5e-31 139.8 77 79.2
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 3.3e-29 133.3 115 54.8
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 2.3e-27 127.1 77 80.5
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.3e-27 127.1 77 80.5
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.3e-27 127.1 77 80.5
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.6e-26 123.6 67 88.1
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 3.5e-23 113.2 131 47.3
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 3.0e-22 110.2 74 66.2
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 3.2e-16 90.1 59 69.5
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 9.2e-16 88.6 78 60.3
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 1.2e-15 88.2 82 54.9
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 7.8e-15 85.5 171 35.7
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 1.0e-14 85.1 42 85.7
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 3.0e-14 83.6 44 79.5
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 1.5e-13 81.3 105 46.7
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.5e-13 81.3 64 57.8
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 1.1e-11 75.1 82 52.4
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 6.8e-11 72.4 73 50.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.4e-10 69.7 187 27.8
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 4.1e-08 63.2 196 26.5
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.1e-07 60.8 46 58.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.3e-06 57.4 189 29.1
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 3.9e-06 56.6 38 73.7
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 3.9e-06 56.6 38 73.7


User provided reference genes

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