Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 3.1e-141 505.4 306 100.0
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 4.3e-106 388.7 306 75.5
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.4e-104 383.6 306 77.1
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 6.8e-104 381.3 308 68.8
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 3.7e-102 375.6 318 70.1
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.9e-101 373.2 304 74.3
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 7.8e-100 367.9 306 71.6
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.0e-99 367.5 308 69.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 5.1e-99 365.2 305 72.8
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 8.6e-99 364.4 306 76.5
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.9e-98 363.2 311 71.4
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 5.6e-98 361.7 305 75.1
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.6e-98 361.7 307 71.7
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 9.5e-98 360.9 308 68.5
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.2e-97 360.5 305 75.4
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.1e-97 359.8 304 72.7
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.8e-97 359.4 308 71.8
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 3.6e-97 359.0 308 67.5
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 4.7e-97 358.6 308 66.9
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 6.2e-97 358.2 308 72.4
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 8.1e-97 357.8 309 67.3
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.8e-96 356.7 304 64.1
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.1e-96 355.9 305 68.5
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 5.2e-96 355.1 278 77.0
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.5e-95 353.6 302 74.5
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.0e-95 353.2 304 66.8
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.6e-95 352.8 304 64.5
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.6e-95 352.8 304 70.7
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 4.4e-95 352.1 308 63.6
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.7e-94 350.1 319 63.6
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.2e-94 349.7 305 69.8
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 2.2e-94 349.7 307 73.6
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 6.4e-94 348.2 306 72.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.4e-93 347.1 282 71.3
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.4e-93 347.1 306 64.4
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 1.9e-93 346.7 309 66.7
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.9e-93 346.7 281 79.0
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 5.4e-93 345.1 275 68.0
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 7.1e-93 344.7 307 69.7
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 9.2e-93 344.4 310 63.9
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.6e-92 343.6 307 69.4
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.7e-92 342.8 305 63.0
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.0e-91 340.9 306 66.3
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.0e-91 340.9 342 67.8
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.3e-91 340.5 308 69.8
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.0e-91 339.3 305 64.3
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 5.1e-91 338.6 306 66.0
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.1e-90 337.4 306 65.0
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.3e-90 335.9 305 70.2
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.6e-89 333.6 304 61.2
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.1e-89 333.2 307 65.8
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.6e-87 326.2 320 64.7
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.4e-85 320.5 299 71.6
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.4e-85 320.5 308 58.8
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.9e-85 320.1 308 58.8
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.7e-84 316.2 324 66.4
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.3e-83 313.9 313 62.9
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.3e-83 313.2 255 72.5
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 5.1e-83 312.0 305 68.5
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 8.7e-83 311.2 179 86.0
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.1e-82 310.8 307 68.1
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.3e-81 307.4 305 64.9
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.3e-81 307.4 308 55.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 3.6e-81 305.8 305 65.2
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 5.3e-80 302.0 343 61.2
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.0e-79 300.1 333 60.4
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 2.6e-79 299.7 307 63.2
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.6e-79 299.7 346 63.6
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 4.5e-79 298.9 284 62.7
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 5.8e-79 298.5 291 62.9
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.7e-78 297.0 334 64.1
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.2e-78 296.6 303 61.7
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 5.4e-77 292.0 306 60.5
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 9.3e-77 291.2 289 69.9
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.6e-76 290.4 187 78.6
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 5.6e-74 282.0 309 58.6
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.7e-73 279.3 304 63.5
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 8.1e-73 278.1 306 62.7
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.1e-72 277.7 304 63.2
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 5.3e-72 275.4 304 59.9
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.0e-70 271.2 294 61.9
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.9e-70 269.6 304 53.9
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.9e-70 269.6 307 59.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.9e-70 268.9 278 68.0
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 3.9e-67 259.2 304 56.9
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.9e-66 256.9 301 64.5
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.9e-66 256.9 304 62.5
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.5e-66 256.5 305 51.8
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.5e-66 256.5 305 51.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 5.7e-66 255.4 309 60.2
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 5.7e-66 255.4 309 60.2
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.6e-66 254.6 189 69.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 9.0e-64 248.1 309 52.4
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.5e-63 247.3 311 52.1
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 2.0e-63 246.9 305 59.0
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 3.4e-63 246.1 306 52.9
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.0e-62 244.6 305 52.1
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.0e-62 244.6 305 52.1
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 1.0e-62 244.6 305 52.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.2e-61 239.6 331 45.6
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 9.3e-61 238.0 365 52.6
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 4.8e-57 225.7 193 62.2
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.4e-56 224.2 195 61.5
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.8e-56 223.8 307 46.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.4e-56 223.4 307 53.4
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 4.1e-56 222.6 307 57.7
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 5.9e-55 218.8 277 58.5
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 5.0e-54 215.7 305 49.2
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.9e-53 213.8 189 63.5
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.0e-51 208.0 308 53.9
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.3e-48 195.7 133 69.9
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 7.9e-44 181.8 137 68.6
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.6e-39 166.8 134 62.7
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.5e-39 166.4 222 49.1
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.5e-39 166.4 158 58.2
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.1e-37 161.4 168 78.6
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.1e-36 155.6 173 53.2
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 7.4e-34 148.7 105 72.4
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 2.3e-27 127.1 147 49.7
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.7e-25 120.9 66 89.4
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.1e-20 104.0 97 60.8
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 3.6e-20 103.2 135 54.1
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 4.7e-20 102.8 95 61.1
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.7e-20 102.8 95 61.1
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 3.4e-18 96.7 68 70.6
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 5.7e-18 95.9 133 55.6
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.4e-16 91.3 64 70.3
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.1e-12 77.4 48 70.8
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 3.0e-11 73.6 52 69.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.9e-09 67.0 111 45.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.6e-07 61.2 99 40.4
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.7e-07 60.5 60 58.3
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.6e-07 59.7 29 86.2
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 2.9e-06 57.0 102 33.3
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.6e-06 55.8 99 38.4
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 8.6e-06 55.5 96 37.5
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 8.6e-06 55.5 58 43.1
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 8.6e-06 55.5 96 35.4


User provided reference genes

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