Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.3e-210 736.1 370 100.0
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 6.9e-167 590.9 368 80.7
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 2.6e-166 589.0 370 80.0
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.4e-164 583.2 363 81.3
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 1.6e-163 579.7 363 81.0
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.6e-163 579.7 363 80.7
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.3e-162 576.6 370 78.6
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.7e-162 576.2 370 77.3
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 3.0e-162 575.5 367 79.0
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.0e-162 575.5 367 77.9
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 5.1e-162 574.7 363 79.1
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 6.6e-162 574.3 363 79.6
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 8.7e-162 573.9 358 79.9
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.1e-161 573.5 354 80.5
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 4.3e-161 571.6 363 78.5
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.3e-160 570.1 367 77.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.3e-160 570.1 362 79.3
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 4.8e-160 568.2 367 76.6
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 4.0e-159 565.1 367 79.0
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.3e-159 564.7 368 76.9
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 6.9e-159 564.3 367 76.0
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.2e-158 563.5 366 78.1
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 2.6e-158 562.4 359 78.8
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.6e-158 562.4 368 76.6
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 5.8e-158 561.2 370 78.6
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 5.8e-158 561.2 370 78.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 9.9e-158 560.5 357 79.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.7e-157 559.7 367 77.4
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.2e-157 559.3 368 75.8
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 6.4e-157 557.8 368 75.5
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 6.4e-157 557.8 368 76.1
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 1.1e-156 557.0 357 78.2
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.1e-156 557.0 368 77.2
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.4e-156 556.6 363 77.4
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.4e-156 556.6 363 78.2
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 3.2e-156 555.4 357 78.2
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 3.2e-156 555.4 357 78.2
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 3.2e-156 555.4 357 78.2
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 4.2e-156 555.1 357 78.2
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 9.3e-156 553.9 363 78.0
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.6e-155 553.1 357 77.9
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.1e-155 552.7 367 76.3
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.7e-155 552.4 366 77.0
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 4.6e-155 551.6 357 77.6
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 6.0e-155 551.2 363 77.4
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 8.7e-154 547.4 358 77.7
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-153 547.0 366 75.7
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.5e-153 546.6 386 72.8
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.9e-153 546.2 359 76.9
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.9e-153 546.2 359 76.9
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.3e-153 545.4 348 78.4
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 4.3e-153 545.0 363 77.1
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 9.6e-153 543.9 372 75.8
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 2.8e-152 542.3 362 74.9
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 2.4e-151 539.3 360 76.4
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.4e-151 539.3 362 74.6
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 5.3e-151 538.1 362 74.6
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 1.2e-150 537.0 358 74.9
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.6e-150 535.8 358 75.7
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.4e-150 535.4 358 75.1
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 4.5e-150 535.0 370 74.6
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 6.5e-149 531.2 370 71.1
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.4e-148 530.0 368 73.9
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 2.5e-148 529.3 384 69.5
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 3.2e-148 528.9 368 74.5
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 3.2e-148 528.9 363 73.8
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 5.5e-148 528.1 363 73.6
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 1.6e-147 526.6 376 71.3
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 7.9e-147 524.2 366 72.1
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.0e-146 523.9 361 74.2
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.3e-146 522.7 368 73.1
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 3.9e-146 521.9 354 74.6
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 5.1e-146 521.5 364 70.6
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 6.7e-146 521.2 368 70.4
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 5.7e-145 518.1 359 73.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.3e-144 516.9 352 74.4
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.7e-144 515.4 367 71.7
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 2.4e-143 512.7 366 70.2
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 2.6e-142 509.2 350 74.3
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 3.4e-142 508.8 352 74.1
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.0e-141 507.3 314 78.7
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.6e-139 500.0 353 73.7
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 4.6e-139 498.4 383 67.9
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.8e-138 496.5 347 73.5
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.3e-137 492.3 359 73.3
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 5.7e-137 491.5 389 67.1
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 7.4e-137 491.1 358 69.8
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.2e-136 489.6 359 72.4
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 8.2e-136 487.6 355 67.9
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 1.1e-135 487.3 313 80.8
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.1e-135 487.3 342 75.1
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 6.9e-135 484.6 358 70.1
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.0e-134 483.0 367 67.6
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.7e-133 479.9 311 80.1
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 9.4e-132 474.2 347 72.0
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.7e-131 472.6 407 62.2
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 6.1e-131 471.5 315 72.4
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 9.7e-129 464.2 313 72.8
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.7e-128 463.4 370 68.1
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 4.8e-128 461.8 325 72.0
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 2.4e-127 459.5 330 72.1
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 6.9e-127 458.0 359 64.1
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 4.5e-126 455.3 313 75.1
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.1e-124 450.7 369 65.3
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 7.9e-123 444.5 294 74.1
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 2.6e-121 439.5 341 69.8
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 6.3e-120 434.9 328 68.0
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.1e-119 434.1 370 62.4
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.8e-119 433.3 262 81.3
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.0e-118 429.9 308 71.4
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 5.0e-117 425.2 262 79.4
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 6.1e-115 418.3 312 69.6
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 8.0e-115 417.9 307 69.1
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.0e-113 413.3 281 77.6
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 8.5e-109 397.9 398 58.0
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.5e-108 396.4 309 65.7
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 5.5e-108 395.2 277 75.1
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.1e-107 393.3 262 78.6
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.3e-104 384.0 265 74.7
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 3.7e-104 382.5 243 77.0
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.4e-103 379.8 375 52.3
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.7e-101 373.6 371 53.6
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.5e-100 369.8 268 73.5
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 1.4e-98 364.0 232 81.0
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 2.0e-97 360.1 320 62.5
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 9.8e-97 357.8 358 51.7
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 2.7e-94 349.7 342 54.1
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.5e-86 322.8 233 71.7
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.6e-85 318.5 198 79.8
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.1e-84 317.8 233 72.5
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.9e-84 317.0 288 54.2
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.5e-81 307.4 265 62.6
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 8.3e-80 301.6 206 73.3
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 7.3e-76 288.5 334 45.2
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 2.1e-62 243.8 186 68.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.7e-62 243.4 166 75.3
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.8e-59 233.4 376 41.2
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 3.8e-48 196.4 180 61.1
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 5.3e-34 149.4 95 74.7
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 4.3e-28 129.8 70 81.4
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 9.6e-28 128.6 70 81.4
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 9.6e-28 128.6 67 85.1
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 9.6e-28 128.6 70 81.4
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.1e-27 127.5 70 82.9
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 2.8e-27 127.1 147 51.0
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 3.1e-26 123.6 63 87.3
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-22 111.7 95 62.1
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 6.3e-11 72.8 55 69.1
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 3.8e-08 63.5 40 75.0
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 1.9e-07 61.2 48 60.4
Lj1A771T12 Lonicera japonica HOM05D024127 ORTHO05D025733 6.1e-06 56.2 36 72.2


User provided reference genes

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