Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 9.2e-185 650.2 359 100.0
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.2e-139 500.4 314 85.4
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 3.3e-97 359.4 318 62.6
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.4e-94 349.4 326 59.2
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-92 344.4 330 57.3
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.0e-91 340.1 297 58.9
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 3.3e-89 332.8 318 55.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 9.5e-89 331.3 321 56.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.7e-88 328.9 316 56.6
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.9e-87 324.7 309 56.6
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.1e-84 317.8 309 54.7
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.4e-84 315.5 330 53.3
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.7e-83 313.2 317 54.9
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 7.8e-83 311.6 309 55.0
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 7.8e-83 311.6 316 54.4
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 7.8e-83 311.6 318 53.1
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.1e-82 308.9 318 54.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 5.1e-82 308.9 324 52.5
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.6e-82 308.1 322 53.7
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.9e-81 307.0 295 54.6
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 7.3e-81 305.1 319 53.3
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 7.3e-81 305.1 316 53.2
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 9.5e-81 304.7 298 54.7
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.6e-80 303.9 295 54.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.6e-80 302.8 322 52.8
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.2e-80 302.0 295 54.6
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 8.1e-80 301.6 327 53.8
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.1e-79 301.2 324 53.1
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.4e-79 300.8 322 52.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 4.0e-79 299.3 317 52.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 5.2e-79 298.9 343 49.6
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 8.9e-79 298.1 311 50.8
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.2e-78 297.7 295 53.9
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.5e-78 297.4 311 51.8
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 3.4e-78 296.2 315 53.0
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 7.5e-78 295.0 308 52.9
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.9e-77 293.1 324 51.9
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 4.9e-77 292.4 277 56.0
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 6.4e-77 292.0 302 54.3
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 6.4e-77 292.0 315 52.4
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.9e-76 290.4 314 50.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.4e-76 290.0 322 50.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-76 290.0 322 50.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.4e-76 290.0 322 50.3
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 3.2e-76 289.7 278 55.0
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 4.1e-76 289.3 268 57.1
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 5.4e-76 288.9 322 50.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 5.4e-76 288.9 322 50.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.5e-75 286.2 324 49.4
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 3.5e-75 286.2 318 50.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.5e-75 286.2 310 51.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 4.6e-75 285.8 310 49.7
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.0e-74 284.6 324 49.1
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.3e-74 284.3 324 49.7
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.3e-74 284.3 323 50.2
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.3e-74 284.3 315 49.2
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.7e-74 283.9 324 49.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.3e-74 283.5 323 48.6
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.1e-74 282.3 325 48.9
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.1e-74 282.3 323 48.6
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 5.1e-74 282.3 317 51.7
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.6e-74 282.0 314 50.6
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.6e-74 282.0 324 49.1
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 6.6e-74 282.0 317 49.5
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 6.6e-74 282.0 315 49.2
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 8.6e-74 281.6 315 48.9
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.5e-73 280.0 323 50.5
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 5.6e-73 278.9 324 48.8
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 7.3e-73 278.5 322 49.1
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.2e-72 277.7 312 51.3
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.6e-72 277.3 323 50.5
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.6e-72 277.3 323 50.5
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.6e-72 277.3 323 50.5
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 2.1e-72 276.9 322 47.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.8e-72 276.6 323 49.2
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.8e-72 276.6 321 50.8
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.8e-72 276.6 324 49.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.8e-72 276.6 322 48.1
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.8e-72 276.6 324 49.7
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 4.7e-72 275.8 319 48.6
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.7e-72 275.8 323 48.9
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.7e-72 275.8 323 48.9
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 6.2e-72 275.4 323 49.2
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 6.2e-72 275.4 321 49.2
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 6.2e-72 275.4 315 49.8
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.4e-71 274.2 291 52.2
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.8e-71 273.9 320 49.1
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.8e-71 273.9 322 50.0
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-71 273.1 321 50.2
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.8e-70 268.9 324 49.1
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 7.6e-70 268.5 319 46.1
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 7.6e-70 268.5 325 48.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 9.9e-70 268.1 325 48.9
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.7e-69 267.3 324 47.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 2.2e-69 266.9 312 46.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.8e-69 266.2 334 45.8
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 4.9e-69 265.8 370 43.8
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.4e-69 265.4 318 47.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 6.4e-69 265.4 279 52.3
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.9e-68 263.8 311 48.2
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.2e-68 263.1 317 47.6
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 3.2e-68 263.1 329 46.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.2e-68 263.1 320 47.2
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 7.1e-68 261.9 320 48.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 7.1e-68 261.9 319 48.0
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 7.8e-67 258.5 313 46.3
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.3e-66 257.7 323 44.9
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.7e-66 257.3 310 48.7
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.3e-66 256.9 289 50.5
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.3e-66 256.9 329 46.2
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.3e-66 256.9 260 49.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 5.1e-66 255.8 320 46.9
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 5.1e-66 255.8 318 43.1
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 5.1e-66 255.8 323 45.8
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 6.6e-66 255.4 319 47.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.8e-64 249.2 283 50.5
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.2e-64 248.8 422 40.5
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 8.1e-64 248.4 335 43.6
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.1e-63 248.1 322 44.4
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.4e-63 247.7 255 50.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.8e-63 247.3 314 44.6
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 6.9e-63 245.4 291 47.8
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.2e-62 244.6 255 51.8
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.2e-62 244.6 255 49.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.5e-62 244.2 322 42.5
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 3.4e-62 243.0 321 45.5
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.7e-61 240.7 329 43.2
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 9.3e-60 235.0 322 43.5
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.1e-58 229.2 319 42.9
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.3e-56 224.6 319 42.0
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 4.8e-56 222.6 312 41.3
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 8.1e-56 221.9 319 40.8
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 5.3e-55 219.2 321 43.3
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 3.2e-52 209.9 328 40.2
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.6e-51 207.6 222 51.4
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 4.3e-49 199.5 309 42.4
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 7.1e-44 182.2 208 51.4
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.4e-39 167.9 162 54.9
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 3.4e-38 163.3 268 32.8
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.8e-37 159.8 173 52.0
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.3e-32 142.5 309 32.0
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.1e-31 141.7 312 33.3
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 3.1e-31 140.2 164 50.0
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 7.9e-27 125.6 305 29.2
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 8.8e-26 122.1 307 31.6
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.3e-25 120.2 176 39.2
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.1e-23 115.2 133 45.1
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.1e-23 113.6 133 44.4
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.9e-20 104.4 114 47.4
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-15 88.6 86 47.7
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.1e-15 86.7 88 54.5
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.1e-15 86.7 88 54.5
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.5e-14 84.7 104 45.2
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-12 78.2 101 46.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 5.5e-12 76.3 92 43.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 6.1e-11 72.8 66 47.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 6.1e-11 72.8 66 47.0
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 6.1e-11 72.8 66 47.0
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 2.3e-10 70.9 130 39.2
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.1e-09 68.6 85 41.2


User provided reference genes

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