Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.3e-100 369.8 190 100.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 8.0e-95 350.5 190 93.2
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 1.7e-76 289.7 201 71.6
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 3.2e-75 285.4 188 73.9
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 4.6e-74 281.6 201 70.1
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 6.0e-74 281.2 200 70.5
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 7.8e-74 280.8 188 73.9
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.3e-73 280.0 200 70.0
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 3.9e-73 278.5 200 70.0
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 8.6e-73 277.3 200 70.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.1e-72 276.9 200 71.0
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.5e-72 276.6 200 70.0
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.9e-72 276.2 199 71.4
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.5e-72 275.8 201 69.7
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.6e-72 274.6 200 70.5
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.6e-72 274.6 200 70.5
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 9.5e-72 273.9 200 70.0
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.6e-71 273.1 200 70.5
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 1.1e-70 270.4 199 67.8
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.4e-70 270.0 181 72.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 2.3e-70 269.2 200 70.0
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 3.1e-70 268.9 198 68.7
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 4.0e-70 268.5 199 69.8
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 4.0e-70 268.5 200 68.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 4.0e-70 268.5 200 68.5
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 5.2e-70 268.1 200 68.5
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 6.8e-70 267.7 200 68.0
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 8.9e-70 267.3 200 68.0
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-69 266.9 200 68.0
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.5e-69 266.5 202 67.3
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.0e-69 266.2 200 70.0
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.0e-69 266.2 200 67.5
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.4e-69 265.4 198 65.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 5.8e-69 264.6 198 65.7
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 5.8e-69 264.6 200 68.5
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 9.9e-69 263.8 201 66.2
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.3e-68 263.5 200 66.5
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.7e-68 263.1 199 66.3
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.7e-68 263.1 198 65.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.2e-68 262.7 200 68.0
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.9e-68 262.3 198 67.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 3.7e-68 261.9 198 66.7
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 4.9e-68 261.5 200 68.0
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 8.4e-68 260.8 200 67.5
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.4e-68 260.8 200 66.5
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.1e-67 260.4 200 67.5
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 2.4e-67 259.2 198 66.7
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 3.2e-67 258.8 198 66.2
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.2e-67 258.8 198 66.2
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 3.2e-67 258.8 198 65.7
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 7.1e-67 257.7 194 68.0
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 7.1e-67 257.7 194 68.0
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 7.1e-67 257.7 200 66.0
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 9.2e-67 257.3 194 67.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.2e-66 256.9 200 67.5
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.6e-66 256.5 194 67.0
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.6e-66 256.5 200 65.5
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.1e-66 256.1 200 66.0
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.7e-66 255.8 201 66.7
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 4.6e-66 255.0 198 67.7
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 6.0e-66 254.6 200 66.5
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 6.0e-66 254.6 200 65.0
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 6.0e-66 254.6 193 66.8
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.0e-65 253.8 199 66.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.7e-65 253.1 201 64.7
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.3e-65 252.7 192 68.2
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 3.0e-65 252.3 200 65.5
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 3.9e-65 251.9 198 65.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 5.1e-65 251.5 193 65.8
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 5.1e-65 251.5 192 67.2
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 6.6e-65 251.1 192 66.7
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 6.6e-65 251.1 204 64.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 8.6e-65 250.8 193 65.8
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-64 250.4 193 65.3
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.1e-64 250.4 193 65.3
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.9e-64 249.6 210 62.4
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-64 249.6 193 65.3
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.9e-64 249.6 193 65.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.3e-64 248.8 198 64.1
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 3.3e-64 248.8 203 63.1
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 7.3e-64 247.7 193 64.8
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 9.6e-64 247.3 200 66.0
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.1e-63 246.1 199 64.3
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.8e-63 245.7 198 64.6
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.6e-63 245.4 164 73.8
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 3.6e-63 245.4 200 62.5
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 8.1e-63 244.2 193 66.3
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.4e-62 242.7 182 67.6
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.1e-62 242.3 200 62.5
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 6.8e-62 241.1 193 64.8
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 8.9e-62 240.7 193 62.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 2.0e-61 239.6 200 61.5
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-60 236.5 164 70.1
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.7e-60 236.5 193 63.2
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.2e-60 236.1 200 60.0
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 4.9e-60 235.0 198 62.6
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 6.4e-60 234.6 193 63.7
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 6.4e-60 234.6 200 60.0
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.9e-59 233.0 198 62.6
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.9e-59 233.0 193 62.7
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 2.4e-59 232.6 200 60.0
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.6e-58 229.9 197 62.4
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 7.8e-58 227.6 200 59.0
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 7.8e-58 227.6 165 70.9
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-57 226.1 223 56.5
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.7e-57 224.2 164 68.9
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 8.7e-57 224.2 190 61.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.5e-56 223.4 176 65.3
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.5e-56 222.6 185 59.5
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.5e-56 222.6 190 61.1
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 3.3e-56 222.2 329 42.2
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 2.1e-55 219.5 175 64.6
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 6.2e-55 218.0 200 53.0
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 2.4e-54 216.1 198 58.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 6.4e-52 208.0 198 57.6
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 8.4e-52 207.6 199 56.3
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 4.2e-51 205.3 181 59.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.3e-49 200.3 253 50.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 3.9e-49 198.7 165 63.6
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 8.7e-49 197.6 219 52.5
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 7.3e-48 194.5 213 51.6
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.1e-43 180.6 237 47.3
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.5e-42 175.6 197 48.7
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 4.6e-42 175.3 188 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 6.0e-42 174.9 190 49.5
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.5e-40 169.5 216 50.0
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 5.6e-40 168.3 117 67.5
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.3e-36 157.1 117 68.4
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.8e-36 155.6 116 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.0e-33 147.5 162 49.4
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 1.8e-33 146.7 112 67.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.6e-31 140.2 112 63.4
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 8.2e-31 137.9 196 42.3
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.9e-29 131.7 144 47.9
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.1e-27 127.5 112 58.9
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.1e-24 117.5 87 63.2
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.1e-24 117.5 206 36.9
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-23 114.0 126 49.2
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 3.7e-23 112.5 130 50.8
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 2.0e-21 106.7 85 63.5
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.0e-21 106.7 94 55.3
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.5e-21 105.5 81 66.7
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 7.7e-21 104.8 99 60.6
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.8e-20 102.4 103 56.3
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.4e-19 100.5 81 63.0
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.5e-19 99.8 75 68.0
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 4.2e-19 99.0 74 67.6
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.2e-19 99.0 72 65.3
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.2e-19 98.2 68 72.1
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 7.2e-19 98.2 66 77.3
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 7.2e-19 98.2 208 37.0
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.6e-18 95.5 84 59.5
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.8e-17 93.6 94 53.2
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 2.3e-17 93.2 117 47.9
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.5e-16 89.7 70 60.0
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 4.8e-15 85.5 75 57.3
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.9e-14 81.6 112 45.5
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 4.7e-10 68.9 48 64.6
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 4.4e-08 62.4 42 69.0
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 1.8e-06 57.0 74 43.2
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.8e-06 57.0 36 72.2
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 5.3e-06 55.5 42 64.3


User provided reference genes

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