Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 4.6e-149 531.2 263 100.0
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 6.7e-100 367.9 262 68.3
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.3e-98 363.6 269 69.5
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 6.3e-98 361.3 266 68.0
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.5e-96 355.1 267 68.9
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 5.9e-96 354.8 265 67.2
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 5.9e-96 354.8 271 69.0
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 2.2e-95 352.8 265 65.3
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 6.5e-95 351.3 266 66.2
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.1e-94 350.5 270 66.7
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 4.2e-94 348.6 270 67.0
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 5.5e-94 348.2 263 67.3
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 7.2e-94 347.8 271 64.9
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 1.2e-93 347.1 267 64.8
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 1.2e-93 347.1 261 65.1
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.6e-93 346.7 270 64.8
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.1e-93 346.3 271 64.6
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 2.7e-93 345.9 264 65.9
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 3.6e-93 345.5 283 65.0
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 4.7e-93 345.1 271 63.5
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 4.7e-93 345.1 271 64.6
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 1.4e-92 343.6 260 69.6
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 2.3e-92 342.8 265 63.8
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 2.3e-92 342.8 232 72.0
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.9e-92 342.0 267 64.4
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.9e-92 342.0 267 64.4
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 6.7e-92 341.3 263 63.9
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 8.8e-92 340.9 265 64.9
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.1e-91 340.5 267 64.0
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.5e-91 340.1 263 64.6
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.6e-91 339.3 264 63.6
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 3.3e-91 339.0 264 64.0
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 4.4e-91 338.6 263 63.5
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 7.4e-91 337.8 279 63.4
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 9.7e-91 337.4 267 64.8
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 1.3e-90 337.0 225 72.9
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.3e-90 337.0 271 62.7
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 4.8e-90 335.1 263 62.7
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 4.8e-90 335.1 274 62.8
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 8.2e-90 334.3 287 63.4
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.1e-89 334.0 232 70.3
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.1e-89 334.0 265 61.9
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.4e-89 333.6 223 74.4
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.8e-89 333.2 225 71.1
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 4.1e-89 332.0 272 62.5
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 9.1e-89 330.9 261 62.5
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.6e-88 330.1 229 69.0
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.0e-88 329.7 230 69.6
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.0e-88 329.7 232 69.8
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.5e-88 328.9 269 63.6
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.5e-88 328.6 285 60.7
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 4.5e-88 328.6 229 69.0
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.5e-88 328.6 256 64.5
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 7.7e-88 327.8 230 69.1
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.0e-87 327.4 275 60.0
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 1.0e-87 327.4 265 64.5
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.0e-87 327.4 231 68.0
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.0e-87 327.4 231 70.1
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 2.9e-87 325.9 270 61.5
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.5e-86 323.6 267 60.7
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.9e-86 323.2 222 69.8
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 4.2e-86 322.0 225 68.4
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.2e-86 322.0 238 66.8
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.2e-86 322.0 238 66.8
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 4.2e-86 322.0 232 68.5
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.5e-86 321.6 227 70.9
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 9.4e-86 320.9 269 59.9
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 9.4e-86 320.9 267 61.4
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 2.1e-85 319.7 225 70.7
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 3.6e-85 318.9 264 59.8
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.6e-85 318.9 230 68.7
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 8.0e-85 317.8 268 60.8
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 2.3e-84 316.2 264 61.7
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.3e-84 316.2 264 61.0
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 4.0e-84 315.5 228 66.7
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.5e-83 313.5 249 65.5
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 2.0e-83 313.2 271 62.4
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 4.4e-83 312.0 256 61.3
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.3e-82 310.5 254 62.6
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 4.8e-82 308.5 228 66.7
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 1.4e-81 307.0 225 66.2
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.4e-81 307.0 227 67.0
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 9.1e-81 304.3 267 59.6
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 9.1e-81 304.3 267 59.6
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 9.1e-81 304.3 267 59.6
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 5.9e-80 301.6 237 62.9
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 5.9e-80 301.6 237 62.9
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.9e-78 296.6 268 56.3
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 9.4e-78 294.3 222 65.3
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 6.1e-77 291.6 260 57.7
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.8e-76 290.0 223 65.0
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 3.0e-76 289.3 225 63.6
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 4.0e-76 288.9 324 49.1
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 5.2e-76 288.5 271 56.5
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.3e-74 283.9 222 63.1
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.2e-74 283.1 221 62.0
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 8.3e-74 281.2 251 56.6
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 9.1e-73 277.7 253 55.7
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 2.9e-71 272.7 233 59.2
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.5e-70 269.6 220 64.1
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 4.2e-70 268.9 184 70.7
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 8.0e-69 264.6 222 59.0
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 8.0e-69 264.6 230 54.8
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 2.2e-66 256.5 470 36.8
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 1.8e-65 253.4 208 56.7
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 1.9e-62 243.4 214 53.7
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 1.4e-52 210.7 212 47.2
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 2.6e-51 206.5 207 45.4
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.3e-50 204.1 161 62.7
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 3.9e-47 192.6 117 77.8
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.3e-46 189.5 157 59.2
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.4e-43 179.1 127 69.3
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.5e-40 169.5 109 71.6
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.5e-38 163.3 105 71.4
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 7.3e-38 161.8 102 72.5
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.2e-34 150.2 115 66.1
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 1.9e-33 147.1 116 66.4
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.6e-31 138.7 99 65.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 7.3e-30 135.2 128 53.9
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 5.1e-23 112.5 231 29.4
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 5.3e-20 102.4 84 58.3
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.5e-19 100.9 86 59.3
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 2.4e-17 93.6 67 68.7
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.9e-10 70.1 103 45.6
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.4e-09 67.0 77 44.2
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 5.6e-06 55.8 47 53.2


User provided reference genes

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