Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 9.7e-44 179.9 98 100.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 1.8e-13 79.3 70 61.4
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.8e-13 79.3 105 51.4
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 2.6e-12 75.5 71 62.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.6e-12 75.5 78 52.6
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.4e-12 74.7 82 53.7
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 5.7e-12 74.3 77 55.8
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.3e-11 73.2 79 54.4
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.3e-11 73.2 64 60.9
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.7e-11 71.6 102 49.0
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 3.7e-11 71.6 80 48.8
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.3e-11 70.5 70 57.1
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.1e-10 70.1 76 57.9
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-10 70.1 82 52.4
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.4e-10 69.7 104 48.1
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.4e-10 69.7 73 50.7
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.4e-10 69.7 74 55.4
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.8e-10 69.3 98 44.9
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-10 69.3 83 56.6
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 77 50.6
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.1e-10 68.6 98 45.9
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.1e-10 68.6 74 52.7
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-10 68.6 83 56.6
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.1e-10 68.6 73 53.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.1e-10 68.2 70 47.1
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 4.1e-10 68.2 74 45.9
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.1e-10 68.2 71 52.1
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 4.1e-10 68.2 42 69.0
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 4.1e-10 68.2 78 48.7
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.1e-10 68.2 69 55.1
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.4e-10 67.8 98 45.9
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 7.0e-10 67.4 83 55.4
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 9.1e-10 67.0 51 62.7
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.1e-10 67.0 59 57.6
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 9.1e-10 67.0 58 58.6
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.2e-09 66.6 82 47.6
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.6e-09 66.2 82 51.2
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.0e-09 65.9 79 49.4
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.0e-09 65.9 83 48.2
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.0e-09 65.9 41 73.2
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 2.0e-09 65.9 43 72.1
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.0e-09 65.9 66 51.5
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.7e-09 65.5 42 76.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.7e-09 65.5 80 53.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 2.7e-09 65.5 71 57.7
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.7e-09 65.5 43 69.8
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.7e-09 65.5 77 46.8
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.7e-09 65.5 105 44.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.7e-09 65.5 82 42.7
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.5e-09 65.1 82 42.7
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 3.5e-09 65.1 83 54.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.5e-09 64.7 41 70.7
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 4.5e-09 64.7 89 44.9
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 4.5e-09 64.7 42 71.4
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.5e-09 64.7 78 46.2
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 5.9e-09 64.3 43 69.8
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.9e-09 64.3 87 50.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 7.7e-09 63.9 42 71.4
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 7.7e-09 63.9 98 45.9
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.7e-09 63.9 52 61.5
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.7e-09 63.9 102 45.1
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.0e-08 63.5 78 50.0
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.0e-08 63.5 62 56.5
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.0e-08 63.5 88 43.2
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.0e-08 63.5 74 48.6
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.0e-08 63.5 105 43.8
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.0e-08 63.5 62 56.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.3e-08 63.2 100 40.0
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.3e-08 63.2 58 60.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.3e-08 63.2 101 44.6
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-08 63.2 66 56.1
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.7e-08 62.8 100 43.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-08 62.8 98 46.9
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.7e-08 62.8 41 68.3
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 1.7e-08 62.8 44 63.6
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.7e-08 62.8 100 43.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.2e-08 62.4 77 46.8
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.2e-08 62.4 77 48.1
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 2.2e-08 62.4 77 46.8
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.2e-08 62.4 40 67.5
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 2.9e-08 62.0 40 67.5
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 2.9e-08 62.0 40 67.5
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.9e-08 62.0 42 69.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.9e-08 62.0 50 60.0
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.9e-08 62.0 47 61.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.9e-08 62.0 42 69.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.9e-08 62.0 51 56.9
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.9e-08 62.0 52 65.4
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.9e-08 62.0 83 48.2
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.9e-08 62.0 83 48.2
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 3.8e-08 61.6 42 66.7
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 5.0e-08 61.2 58 55.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.0e-08 61.2 57 49.1
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 6.5e-08 60.8 42 69.0
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 6.5e-08 60.8 78 50.0
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 8.5e-08 60.5 40 67.5
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 8.5e-08 60.5 84 42.9
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.5e-08 60.5 98 44.9
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 8.5e-08 60.5 79 49.4
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-07 60.1 57 50.9
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.1e-07 60.1 57 50.9
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.1e-07 60.1 42 64.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 42 64.3
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 42 64.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 42 64.3
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 98 41.8
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.1e-07 60.1 38 73.7
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 1.1e-07 60.1 72 52.8
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.1e-07 60.1 73 47.9
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-07 59.7 38 71.1
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.5e-07 59.7 100 42.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.5e-07 59.7 37 75.7
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.5e-07 59.7 107 45.8
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.5e-07 59.7 50 60.0
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.9e-07 59.3 42 66.7
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.9e-07 59.3 70 48.6
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.9e-07 59.3 78 48.7
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.9e-07 59.3 65 47.7
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.9e-07 59.3 41 70.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.9e-07 59.3 61 49.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.5e-07 58.9 43 60.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.5e-07 58.9 57 47.4
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.5e-07 58.9 38 68.4
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.5e-07 58.9 38 71.1
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 2.5e-07 58.9 37 73.0
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-07 58.9 100 43.0
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 3.2e-07 58.5 105 40.0
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-07 58.5 40 67.5
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.2e-07 58.5 65 46.2
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.2e-07 58.5 105 41.0
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.2e-07 58.5 103 39.8
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.2e-07 58.2 104 42.3
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 4.2e-07 58.2 42 66.7
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.2e-07 58.2 37 75.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.2e-07 58.2 70 45.7
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.2e-07 58.2 102 38.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 4.2e-07 58.2 41 68.3
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.5e-07 57.8 101 35.6
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 7.2e-07 57.4 68 48.5
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 7.2e-07 57.4 42 64.3
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 7.2e-07 57.4 43 60.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.4e-07 57.0 101 34.7
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 9.4e-07 57.0 43 62.8
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 48 52.1
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.2e-06 56.6 87 50.6
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.2e-06 56.6 42 64.3
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.6e-06 56.2 38 65.8
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.6e-06 56.2 44 63.6
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.6e-06 56.2 44 63.6
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.6e-06 56.2 44 63.6
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.6e-06 56.2 44 63.6
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.6e-06 56.2 47 53.2
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.1e-06 55.8 44 63.6
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.1e-06 55.8 77 41.6
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.1e-06 55.8 38 68.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.7e-06 55.5 46 54.3
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 3.6e-06 55.1 56 48.2
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.6e-06 55.1 99 39.4
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 3.6e-06 55.1 38 65.8
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 3.6e-06 55.1 46 58.7
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 4.7e-06 54.7 36 61.1
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 6.1e-06 54.3 45 60.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 8.0e-06 53.9 76 40.8
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 8.0e-06 53.9 58 46.6


User provided reference genes

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