Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 6.4e-241 837.0 428 100.0
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 2.2e-164 582.8 437 72.1
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 3.1e-163 578.9 444 71.6
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 2.6e-162 575.9 445 69.4
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 8.5e-161 570.9 435 70.8
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.7e-159 565.8 448 69.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.7e-159 565.1 431 71.5
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.8e-158 563.1 448 68.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 7.4e-157 557.8 455 67.5
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 9.7e-157 557.4 455 67.5
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 9.7e-157 557.4 456 66.4
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 2.2e-156 556.2 465 64.9
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 4.8e-156 555.1 456 66.9
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 6.3e-156 554.7 450 68.4
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 7.0e-155 551.2 420 69.0
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 9.1e-155 550.8 455 66.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 2.6e-154 549.3 463 64.6
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 2.6e-154 549.3 450 66.4
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 5.9e-154 548.1 458 67.0
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 5.9e-154 548.1 455 66.8
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 1.3e-153 547.0 448 66.1
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.7e-153 546.6 439 67.4
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 3.8e-153 545.4 449 66.4
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 5.5e-152 541.6 446 68.2
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.1e-151 539.7 455 65.3
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.7e-151 538.5 453 65.3
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 8.0e-151 537.7 457 66.7
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 8.0e-151 537.7 453 65.8
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.8e-150 536.6 438 64.8
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.3e-150 536.2 453 64.9
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.2e-149 533.9 453 64.5
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 1.5e-149 533.5 400 69.8
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 2.6e-149 532.7 441 65.8
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 3.3e-149 532.3 441 65.8
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 5.7e-149 531.6 453 64.9
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 5.7e-149 531.6 445 65.6
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 7.5e-149 531.2 449 65.3
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.3e-148 530.4 443 66.4
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.7e-148 530.0 432 65.3
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 3.7e-148 528.9 362 73.8
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 6.3e-148 528.1 367 74.9
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.1e-147 525.8 445 63.6
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 4.1e-147 525.4 411 68.6
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 5.3e-147 525.0 445 63.1
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 5.3e-147 525.0 452 66.2
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 5.3e-147 525.0 449 63.9
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 7.0e-147 524.6 432 66.2
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 2.7e-146 522.7 458 64.6
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 2.7e-146 522.7 466 62.2
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 7.7e-146 521.2 356 73.6
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.0e-145 520.8 407 69.3
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.0e-145 520.8 477 62.3
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.3e-145 520.4 439 63.1
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.9e-144 516.5 407 68.8
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.9e-144 516.5 435 63.7
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.9e-144 516.5 443 63.2
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.9e-144 516.5 412 68.0
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 1.9e-144 516.5 372 71.8
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 2.5e-144 516.2 443 63.7
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 5.5e-144 515.0 443 63.2
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 5.5e-144 515.0 374 71.4
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 7.2e-144 514.6 438 63.9
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 9.4e-144 514.2 437 62.9
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 9.4e-144 514.2 380 71.3
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.2e-143 513.8 447 61.5
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 4.7e-143 511.9 435 63.2
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 4.7e-143 511.9 440 63.2
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 8.0e-143 511.1 392 70.2
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 8.0e-143 511.1 435 63.7
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 8.0e-143 511.1 359 72.7
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.4e-142 510.4 436 63.8
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 6.8e-142 508.1 356 73.9
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.2e-141 507.3 431 62.9
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 3.4e-141 505.8 356 73.9
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.7e-140 503.4 359 73.0
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 4.8e-140 501.9 518 56.2
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.1e-139 500.7 368 69.0
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 3.1e-139 499.2 430 62.1
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 5.4e-139 498.4 431 61.9
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 9.1e-139 497.7 374 69.0
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-138 497.3 432 62.7
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.0e-137 494.2 382 67.3
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.0e-137 494.2 365 70.7
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.3e-137 493.8 434 62.4
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.7e-137 493.4 437 60.9
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 2.3e-137 493.0 365 67.9
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 4.2e-136 488.8 359 69.4
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 1.6e-135 486.9 434 61.5
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 2.1e-135 486.5 342 72.2
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 3.0e-134 482.6 355 69.9
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 8.9e-134 481.1 359 67.7
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.2e-133 480.7 348 70.7
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.2e-133 480.7 348 70.7
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 8.3e-132 474.6 364 66.2
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 7.8e-130 468.0 462 57.8
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 7.3e-128 461.5 432 60.2
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 7.3e-128 461.5 441 61.5
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 9.5e-128 461.1 332 69.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.1e-127 459.9 329 69.9
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 3.1e-126 456.1 341 68.6
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.4e-123 445.3 438 57.8
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 2.5e-120 436.4 304 74.0
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 3.3e-120 436.0 333 66.7
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 5.6e-120 435.3 447 57.7
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.5e-112 409.8 321 71.0
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 8.9e-110 401.4 286 72.7
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 2.6e-109 399.8 352 57.4
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 2.6e-109 399.8 279 69.5
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 4.6e-106 389.0 318 66.4
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 8.9e-102 374.8 344 55.2
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.9e-100 369.8 294 69.0
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 7.8e-98 361.7 368 50.8
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 5.3e-94 349.0 240 72.1
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 7.6e-93 345.1 249 69.1
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 8.1e-87 325.1 429 44.1
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 9.9e-85 318.2 289 59.2
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 3.8e-84 316.2 261 60.9
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 2.4e-83 313.5 201 77.6
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 6.0e-74 282.3 359 53.5
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 3.1e-70 270.0 283 50.9
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 2.6e-69 266.9 343 44.6
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.0e-68 265.0 283 50.2
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.3e-68 264.6 284 53.5
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 3.2e-67 260.0 282 53.2
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.0e-65 255.0 189 69.3
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.3e-65 254.6 177 70.1
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 3.2e-59 233.4 236 56.8
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.9e-52 210.3 192 65.1
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 4.8e-47 193.0 199 53.3
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 1.6e-37 161.4 366 34.4
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.5e-32 144.8 121 64.5
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 1.5e-27 128.3 83 74.7
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.2e-26 125.2 84 72.6
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.8e-25 121.3 76 72.4
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 4.4e-24 116.7 72 77.8
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.8e-22 111.3 72 75.0
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 7.0e-22 109.4 83 66.3
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 3.2e-14 84.0 99 47.5
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.5e-11 75.1 57 64.9
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 5.8e-08 63.2 54 61.1


User provided reference genes

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