Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 3.5e-211 738.0 372 100.0
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 9.3e-164 580.5 368 80.4
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 9.3e-164 580.5 371 79.5
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 9.6e-161 570.5 363 79.9
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.3e-160 570.1 372 78.2
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.7e-160 568.5 363 80.4
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.8e-159 566.2 358 79.9
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 5.3e-159 564.7 371 77.9
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 5.9e-158 561.2 354 79.7
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 5.9e-158 561.2 373 78.0
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.4e-156 556.6 365 80.0
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.4e-156 556.6 372 75.8
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.4e-156 556.6 372 75.8
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.4e-156 556.6 372 75.8
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 9.3e-156 553.9 370 75.7
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.2e-155 553.5 336 83.6
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.2e-155 553.5 374 78.3
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 2.1e-155 552.7 376 76.6
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.7e-155 552.4 332 81.9
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 6.1e-155 551.2 385 74.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 5.1e-154 548.1 332 81.3
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 6.7e-154 547.7 357 77.6
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.5e-153 546.6 374 75.4
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.9e-153 546.2 374 75.4
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 4.3e-153 545.0 370 75.7
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.7e-153 544.7 392 73.2
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.7e-153 544.7 396 73.2
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 9.7e-153 543.9 396 73.2
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.3e-152 543.5 360 78.6
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.6e-152 543.1 364 76.6
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 3.7e-152 542.0 339 78.5
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.7e-152 542.0 339 81.4
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 3.7e-152 542.0 364 77.5
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 3.7e-152 542.0 364 77.2
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 4.8e-152 541.6 374 75.7
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 6.3e-152 541.2 374 77.0
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.8e-151 539.7 370 74.9
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 9.0e-151 537.3 370 74.1
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.2e-150 537.0 375 75.5
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 2.6e-150 535.8 371 74.7
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.6e-150 535.8 342 79.8
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 7.7e-150 534.3 373 75.6
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.7e-149 533.1 370 74.3
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.1e-148 530.4 373 73.7
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 5.5e-148 528.1 366 76.0
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 3.6e-147 525.4 375 72.5
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 7.9e-147 524.2 363 72.5
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 1.5e-145 520.0 371 73.3
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 5.7e-145 518.1 369 74.0
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 7.4e-145 517.7 364 73.9
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 9.7e-145 517.3 363 73.8
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.8e-144 515.8 368 72.6
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 6.3e-144 514.6 330 79.1
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.4e-143 513.5 366 74.0
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.8e-143 513.1 307 82.4
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 3.1e-143 512.3 370 73.2
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 4.5e-142 508.4 361 72.3
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.7e-141 506.5 467 61.7
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 2.9e-141 505.8 324 77.8
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 7.2e-140 501.1 387 69.5
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 7.2e-140 501.1 321 78.2
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 6.1e-139 498.0 368 71.7
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.9e-139 497.7 369 70.2
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 7.9e-139 497.7 374 70.3
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.8e-138 496.5 334 76.0
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.8e-138 496.5 345 73.3
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 3.0e-138 495.7 358 72.6
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 5.2e-138 495.0 334 75.1
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 2.6e-137 492.7 345 72.5
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 4.4e-137 491.9 375 69.1
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.4e-137 491.1 357 71.1
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 7.4e-137 491.1 363 69.7
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.7e-136 490.0 285 85.3
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 2.2e-136 489.6 371 67.9
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 2.8e-136 489.2 340 71.5
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 6.3e-136 488.0 366 68.9
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 8.2e-136 487.6 361 71.7
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 8.2e-136 487.6 346 73.1
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 1.4e-135 486.9 351 69.2
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.4e-135 486.1 383 67.1
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.6e-134 483.4 334 72.8
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 7.7e-134 481.1 336 73.8
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.0e-133 480.7 342 72.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 3.8e-133 478.8 310 76.1
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.1e-132 477.2 331 75.5
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 1.1e-132 477.2 369 67.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 3.2e-132 475.7 367 67.3
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 4.2e-132 475.3 374 67.9
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.5e-132 474.9 366 68.3
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.2e-131 473.8 370 67.8
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.7e-131 472.6 370 67.6
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.0e-130 470.7 338 72.8
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.7e-130 468.0 358 69.0
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.3e-129 465.7 311 74.3
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 7.5e-129 464.5 360 68.1
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 3.7e-128 462.2 329 71.4
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.8e-127 459.9 340 68.5
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 3.1e-127 459.1 373 64.3
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 7.0e-127 458.0 298 76.2
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 7.0e-127 458.0 385 63.6
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.6e-126 456.8 369 64.5
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 1.0e-125 454.1 357 66.7
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 8.5e-125 451.1 342 67.3
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 3.2e-124 449.1 335 68.4
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 5.5e-124 448.4 343 66.2
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 9.4e-124 447.6 373 64.1
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.2e-123 447.2 343 67.1
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 3.6e-123 445.7 340 66.2
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 6.1e-123 444.9 360 66.1
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.8e-122 443.4 355 65.6
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.8e-122 443.4 355 65.6
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 3.0e-122 442.6 355 65.4
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.0e-122 442.6 355 65.1
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 4.0e-122 442.2 358 64.2
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 6.8e-122 441.4 368 63.6
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.5e-121 440.3 343 66.8
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 2.6e-121 439.5 380 62.1
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.4e-121 438.7 310 71.3
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 9.8e-121 437.6 342 66.4
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.8e-119 433.3 339 67.0
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 7.0e-119 431.4 361 61.2
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 3.5e-118 429.1 340 65.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 5.9e-118 428.3 335 64.5
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.7e-117 426.8 343 64.4
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.9e-117 426.0 347 64.6
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 3.8e-117 425.6 343 64.1
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 3.8e-117 425.6 343 64.1
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 8.5e-117 424.5 362 59.4
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.2e-115 420.6 277 77.3
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 4.0e-114 415.6 345 63.5
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 8.8e-114 414.5 362 59.4
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 8.0e-107 391.3 468 50.2
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 4.0e-106 389.0 329 59.3
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 4.4e-105 385.6 360 58.1
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 5.4e-103 378.6 330 62.4
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 5.6e-100 368.6 272 67.3
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 3.9e-93 345.9 341 58.7
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 2.5e-92 343.2 259 66.4
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 3.6e-91 339.3 359 50.7
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.5e-89 334.0 339 52.8
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 4.9e-88 328.9 232 72.0
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 9.2e-87 324.7 364 49.7
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.7e-85 320.5 270 58.9
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 3.0e-85 319.7 245 70.2
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 6.6e-85 318.5 207 76.3
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.8e-83 313.2 234 70.5
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.2e-81 307.8 205 74.6
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 2.2e-80 303.5 220 70.5
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.8e-80 302.8 357 48.5
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 6.6e-77 292.0 204 73.5
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 8.1e-75 285.0 283 55.8
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 8.1e-67 258.5 298 45.0
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.2e-54 218.0 138 79.0
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.4e-50 203.8 166 63.9
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 6.5e-48 195.7 141 71.6
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 8.4e-48 195.3 141 70.2
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 3.1e-42 176.8 168 58.3
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 5.9e-41 172.6 89 91.0
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 4.2e-31 139.8 108 67.6
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.5e-23 114.0 86 60.5
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 5.5e-23 112.8 272 28.3
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 2.0e-17 94.4 257 27.2


User provided reference genes

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